Cfor000797.1
Basic Information
- Insect
- Coptotermes formosanus
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_013340265.1
- Location
- BLKM01011693.1:1539387-1551969[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.5e-115 1.2e-110 369.0 35.8 1 300 93 403 93 403 0.91 2 2 0.24 3e+03 -3.3 0.4 137 155 418 436 404 446 0.33
Sequence Information
- Coding Sequence
- ATGGAAACGCCGGTCGTCGAAGAAAGTGGTGAAGCGCGTGCAAAACAGGAGGGAGTAGAGGATGCGGGAGAAGATCCTGGGTTGTGTCATTTTAGTGCTTACGTGAGTGATGGCTGTGGCGAAATACCGAGCAAATCAAATGCAAAATTGAATGGTATCTGCTTCAAAGAGGTCACTGACAGCAGCTTCAGTGGGGCCGAAACCACCAGCGACACTTCTACGACAAAAGAAACAGATGACTGCATTGTGGATTTCCTTGATAAAAACAATGATGAGGCAGAGGCTCGGCTAGCAGCGAGAAGACAAGCAAGAGCTGAAGCACGGGAAATCCGCATGCGGGAACTAGAGAGGCAACAGAAGGAGATAGAGGAGAATGCTGACAGTGTGTATGATATGTACAGAGATCCGTCAAGTCGCTCCACAAGAGTTGCTGCTACTGTCAGCAGCACAAGGAGCACTTCACTTGGTGGGACGAACAGTTATCAGTCAAGTCGCCGCAGTTCGGAGGATTCTCTCGAAGAAGGCATTAGCCTCCGAGATGTGCGGcaAGAGCTGAAAGAGGTGGAAGAAAAGTTTCGAAAAGCAATGATACAGACTGCCCAGCTTGACAATGAGAAGTCGTCACTCACATACCAAGTGGAACTGCTGAAAGATCGGCTGGAGGATCTGGAGGAGGCTTATTCACAGTTACAACGTGAACACAGAGATAAATGTAGGGAACATGACCAACTGAAGCGAGTGACCACAAAACTGAAGGAGGATCTCCAGATTTACAAAGCTGAACTGGAAGAGAGAGATCGTCTCATACAGGAGCAAGGCCTTATGATAGTGGGAGATGATCAAGTATCCAGTGAAGAAGAGAGCAACAGTGCAGAGGATGGTCGTAGTAACATGCCTAGACAGGCACCAAGAAGAGTGCTTGTGTCAGTTGAGTCTGCAGAACTTTTGCAAACTGCTGGAGGAGGCTCATTAGACGTCAGACTGCGGAAGTTTGCTGAAGAAAAAAATGAGCTTCAGGACCAGATACGGCATCTAAAATTAGAACTGGAGGAGGAGAGAAGTAGACACAAGTCAGACAGACAACGAGGTTCTAACAGTGTTAGTCTCAATGGGCCAGACACAGACCTGTTGGATGTTCAGAGAGAAGCCAACAAGCAACTGGGGGACTATAAGTTCAAACTTCAGAAAGCAGAACAAGATGTGTCAACATTGCAGGCCAGTGTGGCACGCTTAGAAAGTCAAGTTATAAGATACAAATCTGCGTCAGAGACGGCAGAGAAAGTTGAAGATGAACTTAaagtggagaagagaaaattgcAGAGGGAGgCAATAATTAATGAACTTTTGGAGTTGGGCGTGTGA
- Protein Sequence
- METPVVEESGEARAKQEGVEDAGEDPGLCHFSAYVSDGCGEIPSKSNAKLNGICFKEVTDSSFSGAETTSDTSTTKETDDCIVDFLDKNNDEAEARLAARRQARAEAREIRMRELERQQKEIEENADSVYDMYRDPSSRSTRVAATVSSTRSTSLGGTNSYQSSRRSSEDSLEEGISLRDVRQELKEVEEKFRKAMIQTAQLDNEKSSLTYQVELLKDRLEDLEEAYSQLQREHRDKCREHDQLKRVTTKLKEDLQIYKAELEERDRLIQEQGLMIVGDDQVSSEEESNSAEDGRSNMPRQAPRRVLVSVESAELLQTAGGGSLDVRLRKFAEEKNELQDQIRHLKLELEEERSRHKSDRQRGSNSVSLNGPDTDLLDVQREANKQLGDYKFKLQKAEQDVSTLQASVARLESQVIRYKSASETAEKVEDELKVEKRKLQREAIINELLELGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288977;
- 90% Identity
- -
- 80% Identity
- -