Cnas010002.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:147922-151011[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.1 7.1e+03 -3.1 0.0 18 45 237 264 234 268 0.74 2 8 0.00019 0.33 10.8 0.2 21 52 285 316 275 318 0.84 3 8 0.32 5.6e+02 0.4 0.0 23 45 315 337 311 350 0.87 4 8 2.4 4.1e+03 -2.3 0.0 23 44 349 370 343 376 0.76 5 8 0.0085 15 5.5 0.0 21 45 403 427 398 430 0.89 6 8 0.00038 0.66 9.8 0.0 21 45 431 455 427 463 0.83 7 8 2.5 4.4e+03 -2.5 0.1 21 36 489 505 485 516 0.67 8 8 0.39 6.8e+02 0.1 0.0 20 43 516 539 507 547 0.77
Sequence Information
- Coding Sequence
- ATGACAACATTATTCAATGaagaatttgataaaatatgcCGTTGTTGTCTGTGTAAAAATGGTGAGATGCGACCATTGTTTGGAAGCTGTCTCGATAATATGCTCAAAATTGTCGCTGAAATTGATGTTAAAGCTGGTGATGGATTGCCTGAATTGATGTGTGTTCCATGTGTATTGCAAGTGAGTCGTGcatttacattcaaacaaCAGTGCCAACGATCGGATCAATCACTGCGAACACTTCTCGGTGATGTTCGAGAGCTAACTGTATCCGACAATaacaattacaaaaattcaacaacaaacaatggTGAACATCAACTTATCCTGACTGATGACAATGATGCCGATCATTTGGACAGTGAATTGGTTTTGGGATCGCTTGAAGAGGAAATTGAATTGTCTAGTTTGCCAAGTGAATCACAATTCACATCGGTTGCTGCTGAAGAAATACAACATTTGACCGACGACGTTTTGAGCGatgcacaaaatatgaaagaagaaacaaatctTTCAACCAAATTTGGTGACTATTTTGACGAAATTAAATTGGATGTCGCACAAGTGGTATCATTAACTGATGACCATTTATCCGATCAATCAATCGAAGAACAATTTGACGACATTCCAACCGATGAAAATGACGACGAATCCAAAAAGATGCCATCAgatgaatttattgaagatATTTTGTCGGAGGAAAAGGTAAAAACGCAAAGTGAATCAGGATTTAACTGCATCGATTGTAATCTTAACTTTGAGACTAGCGAAATACTTAACGCACATGTACAATCACTACatttggttgacagagtgaaCAGTTCGACGACGAATgatatgaataaaatcgaatcgaaaaatgcatttgaatgtcCCGAATGCCATAAAGTATTTGCtgaaaaaaagatattaaGACGTCATCTTAAAATTCATAGCCCAATTAAGCCACACAAATGCACCGAATGTAATATGTCCTTCGCTGAATCATCGAATCTCtcaaaacacatgaaaaaacaCACCGGAGAATTGAGAGCAGTAGTTGGCAAACCAAATTTATGCTCCGTTTGTGGTAAAGGTTTTAAATGGGCAAGTTCATTGTCAAAACACATGAAACATCATACTCGGCATAAAATTCTAAATTGTCCGTACTGCCCGAAATATTATGTCGAAGCGAGATCATTGAATATTCATATGCGAACGCACACAGGTGAAAAACcgtttcaatgtgaaatttgtAAAAAGGGTTTCACTCAAATGGGAAATTTAGAGAAACACATTCGAGTGCATACGGGTGAAAAACCCTTCACTTGTCCGATTTGTTCAAAAGGTTTCTCACAAAGTGGCTACGTTGCAATTCATCTGAGaACTCATACAGGGGAAAAGCCATATTTATGCGATTTTGTTAATTGTGGACGGGCGTTTGCGGGATCAAATACACTTGCAATTCATAAACGAACACATACTGGTGAGCGTCCATTTCAGTGTAGCATGTGTGAGAAAACATTTGCTCGCCAAGAAACGGCAAACATTCATCGACGTACGCACACAGGGGAAAAACCATTTGAGTGCAAAATATGTTCGCGAGGATTTACAAGTTCTGGACATTTAACAGGCCACATGCGTTCCCACACTGGTACAAAGACACACGAGTGTAAAGTGTGTTTGAAACGATTCGCCGGAAGCAGTAGTCTGAAGGTCCACATGAAATCTCACGCTGAAAAAGCTGcccagcaacaacaacaacagcagcagcaagaacaagaacaacaacaacatatttaCGATGACAAGACGACAGTATTTGAGTGCAATATGTGTAAAATGAATATTCCATCATCGGCTCTCACCTCACCGGAAGAGTTGCAAGGCTACAATCATGAATTTATAGATGATGTattaatttgttcaaatgttgCCTCAATCATCGATAGTGGAAAGATTATCGAAGAAATTCACGACGAAAACGGAACGAATATCATTCTAACAACAGCGACAGACATTCAAAATGGACAACAATTACTAATCAATCTCTCCGATTTAAAGTAA
- Protein Sequence
- MTTLFNEEFDKICRCCLCKNGEMRPLFGSCLDNMLKIVAEIDVKAGDGLPELMCVPCVLQVSRAFTFKQQCQRSDQSLRTLLGDVRELTVSDNNNYKNSTTNNGEHQLILTDDNDADHLDSELVLGSLEEEIELSSLPSESQFTSVAAEEIQHLTDDVLSDAQNMKEETNLSTKFGDYFDEIKLDVAQVVSLTDDHLSDQSIEEQFDDIPTDENDDESKKMPSDEFIEDILSEEKVKTQSESGFNCIDCNLNFETSEILNAHVQSLHLVDRVNSSTTNDMNKIESKNAFECPECHKVFAEKKILRRHLKIHSPIKPHKCTECNMSFAESSNLSKHMKKHTGELRAVVGKPNLCSVCGKGFKWASSLSKHMKHHTRHKILNCPYCPKYYVEARSLNIHMRTHTGEKPFQCEICKKGFTQMGNLEKHIRVHTGEKPFTCPICSKGFSQSGYVAIHLRTHTGEKPYLCDFVNCGRAFAGSNTLAIHKRTHTGERPFQCSMCEKTFARQETANIHRRTHTGEKPFECKICSRGFTSSGHLTGHMRSHTGTKTHECKVCLKRFAGSSSLKVHMKSHAEKAAQQQQQQQQQEQEQQQHIYDDKTTVFECNMCKMNIPSSALTSPEELQGYNHEFIDDVLICSNVASIIDSGKIIEEIHDENGTNIILTTATDIQNGQQLLINLSDLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367454;
- 90% Identity
- iTF_00367454;
- 80% Identity
- iTF_00367454;