Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:147922-151011[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.72 27 5.1 0.1 1 23 244 267 244 267 0.92

2 11 4e-05 0.0015 18.5 1.2 1 23 289 311 289 311 0.98

3 11 2.2e-06 8.3e-05 22.5 3.4 1 23 317 339 317 339 0.98

4 11 0.00042 0.016 15.3 1.6 3 23 353 373 352 373 0.98

5 11 2e-05 0.00074 19.5 0.1 2 23 380 401 379 401 0.97

6 11 1.4e-07 5.1e-06 26.3 0.4 1 23 407 429 407 429 0.99

7 11 4e-06 0.00015 21.7 0.2 1 23 435 457 435 457 0.99

8 11 0.0018 0.066 13.4 0.1 1 23 463 487 463 487 0.93

9 11 1.2e-05 0.00044 20.2 1.1 1 23 493 515 493 515 0.99

10 11 1.4e-06 5.4e-05 23.1 1.7 1 23 521 543 521 543 0.98

11 11 2.1e-05 0.00077 19.4 1.8 1 23 549 571 549 571 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.72	27	5.1	0.1	1	23	244	267	244	267	0.92
2	11	4e-05	0.0015	18.5	1.2	1	23	289	311	289	311	0.98
3	11	2.2e-06	8.3e-05	22.5	3.4	1	23	317	339	317	339	0.98
4	11	0.00042	0.016	15.3	1.6	3	23	353	373	352	373	0.98
5	11	2e-05	0.00074	19.5	0.1	2	23	380	401	379	401	0.97
6	11	1.4e-07	5.1e-06	26.3	0.4	1	23	407	429	407	429	0.99
7	11	4e-06	0.00015	21.7	0.2	1	23	435	457	435	457	0.99
8	11	0.0018	0.066	13.4	0.1	1	23	463	487	463	487	0.93
9	11	1.2e-05	0.00044	20.2	1.1	1	23	493	515	493	515	0.99
10	11	1.4e-06	5.4e-05	23.1	1.7	1	23	521	543	521	543	0.98
11	11	2.1e-05	0.00077	19.4	1.8	1	23	549	571	549	571	0.98

Sequence Information

Coding Sequence: ATGACAACATTATTCAATGaagaatttgataaaatatgcCGTTGTTGTCTGTGTAAAAATGGTGAGATGCGACCATTGTTTGGAAGCTGTCTCGATAATATGCTCAAAATTGTCGCTGAAATTGATGTTAAAGCTGGTGATGGATTGCCTGAATTGATGTGTGTTCCATGTGTATTGCAAGTGAGTCGTGcatttacattcaaacaaCAGTGCCAACGATCGGATCAATCACTGCGAACACTTCTCGGTGATGTTCGAGAGCTAACTGTATCCGACAATaacaattacaaaaattcaacaacaaacaatggTGAACATCAACTTATCCTGACTGATGACAATGATGCCGATCATTTGGACAGTGAATTGGTTTTGGGATCGCTTGAAGAGGAAATTGAATTGTCTAGTTTGCCAAGTGAATCACAATTCACATCGGTTGCTGCTGAAGAAATACAACATTTGACCGACGACGTTTTGAGCGatgcacaaaatatgaaagaagaaacaaatctTTCAACCAAATTTGGTGACTATTTTGACGAAATTAAATTGGATGTCGCACAAGTGGTATCATTAACTGATGACCATTTATCCGATCAATCAATCGAAGAACAATTTGACGACATTCCAACCGATGAAAATGACGACGAATCCAAAAAGATGCCATCAgatgaatttattgaagatATTTTGTCGGAGGAAAAGGTAAAAACGCAAAGTGAATCAGGATTTAACTGCATCGATTGTAATCTTAACTTTGAGACTAGCGAAATACTTAACGCACATGTACAATCACTACatttggttgacagagtgaaCAGTTCGACGACGAATgatatgaataaaatcgaatcgaaaaatgcatttgaatgtcCCGAATGCCATAAAGTATTTGCtgaaaaaaagatattaaGACGTCATCTTAAAATTCATAGCCCAATTAAGCCACACAAATGCACCGAATGTAATATGTCCTTCGCTGAATCATCGAATCTCtcaaaacacatgaaaaaacaCACCGGAGAATTGAGAGCAGTAGTTGGCAAACCAAATTTATGCTCCGTTTGTGGTAAAGGTTTTAAATGGGCAAGTTCATTGTCAAAACACATGAAACATCATACTCGGCATAAAATTCTAAATTGTCCGTACTGCCCGAAATATTATGTCGAAGCGAGATCATTGAATATTCATATGCGAACGCACACAGGTGAAAAACcgtttcaatgtgaaatttgtAAAAAGGGTTTCACTCAAATGGGAAATTTAGAGAAACACATTCGAGTGCATACGGGTGAAAAACCCTTCACTTGTCCGATTTGTTCAAAAGGTTTCTCACAAAGTGGCTACGTTGCAATTCATCTGAGaACTCATACAGGGGAAAAGCCATATTTATGCGATTTTGTTAATTGTGGACGGGCGTTTGCGGGATCAAATACACTTGCAATTCATAAACGAACACATACTGGTGAGCGTCCATTTCAGTGTAGCATGTGTGAGAAAACATTTGCTCGCCAAGAAACGGCAAACATTCATCGACGTACGCACACAGGGGAAAAACCATTTGAGTGCAAAATATGTTCGCGAGGATTTACAAGTTCTGGACATTTAACAGGCCACATGCGTTCCCACACTGGTACAAAGACACACGAGTGTAAAGTGTGTTTGAAACGATTCGCCGGAAGCAGTAGTCTGAAGGTCCACATGAAATCTCACGCTGAAAAAGCTGcccagcaacaacaacaacagcagcagcaagaacaagaacaacaacaacatatttaCGATGACAAGACGACAGTATTTGAGTGCAATATGTGTAAAATGAATATTCCATCATCGGCTCTCACCTCACCGGAAGAGTTGCAAGGCTACAATCATGAATTTATAGATGATGTattaatttgttcaaatgttgCCTCAATCATCGATAGTGGAAAGATTATCGAAGAAATTCACGACGAAAACGGAACGAATATCATTCTAACAACAGCGACAGACATTCAAAATGGACAACAATTACTAATCAATCTCTCCGATTTAAAGTAA
Protein Sequence: MTTLFNEEFDKICRCCLCKNGEMRPLFGSCLDNMLKIVAEIDVKAGDGLPELMCVPCVLQVSRAFTFKQQCQRSDQSLRTLLGDVRELTVSDNNNYKNSTTNNGEHQLILTDDNDADHLDSELVLGSLEEEIELSSLPSESQFTSVAAEEIQHLTDDVLSDAQNMKEETNLSTKFGDYFDEIKLDVAQVVSLTDDHLSDQSIEEQFDDIPTDENDDESKKMPSDEFIEDILSEEKVKTQSESGFNCIDCNLNFETSEILNAHVQSLHLVDRVNSSTTNDMNKIESKNAFECPECHKVFAEKKILRRHLKIHSPIKPHKCTECNMSFAESSNLSKHMKKHTGELRAVVGKPNLCSVCGKGFKWASSLSKHMKHHTRHKILNCPYCPKYYVEARSLNIHMRTHTGEKPFQCEICKKGFTQMGNLEKHIRVHTGEKPFTCPICSKGFSQSGYVAIHLRTHTGEKPYLCDFVNCGRAFAGSNTLAIHKRTHTGERPFQCSMCEKTFARQETANIHRRTHTGEKPFECKICSRGFTSSGHLTGHMRSHTGTKTHECKVCLKRFAGSSSLKVHMKSHAEKAAQQQQQQQQQEQEQQQHIYDDKTTVFECNMCKMNIPSSALTSPEELQGYNHEFIDDVLICSNVASIIDSGKIIEEIHDENGTNIILTTATDIQNGQQLLINLSDLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00367834;
90% Identity: iTF_00367834;
80% Identity: iTF_00367834;