Cnas004880.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:1835066-1842211[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 65 3.9 0.3 2 23 6 27 5 27 0.93 2 14 0.091 3.4 8.0 0.0 1 20 889 908 889 909 0.95 3 14 0.016 0.58 10.4 0.3 1 23 1009 1031 1009 1031 0.98 4 14 2.9e-05 0.0011 19.0 1.2 2 23 1034 1055 1034 1055 0.97 5 14 0.038 1.4 9.2 3.0 1 23 1061 1083 1061 1083 0.95 6 14 0.0035 0.13 12.4 5.3 2 23 1090 1111 1089 1112 0.94 7 14 1.6 58 4.1 0.5 6 23 1126 1143 1124 1143 0.97 8 14 0.019 0.72 10.1 4.7 3 23 1150 1171 1148 1171 0.95 9 14 0.0052 0.19 11.9 0.8 2 23 1184 1204 1183 1204 0.95 10 14 0.00013 0.0048 16.9 0.7 1 20 1211 1230 1211 1233 0.94 11 14 3.3e-06 0.00012 22.0 1.1 1 23 1241 1263 1241 1263 0.99 12 14 0.00019 0.0072 16.4 5.3 1 23 1269 1291 1269 1291 0.98 13 14 8.3e-05 0.0031 17.5 3.5 1 23 1297 1319 1297 1319 0.98 14 14 0.0091 0.34 11.1 4.3 1 23 1325 1347 1325 1348 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGCAAATACAGTGTCCTGTTTGTACACTTTATCTCCATGTTGGAATGAATTTACAAGATCATCTGAACACCCATCCAAAAGATCAGGTCATCTCGGCATTAGTTAATATGACACTGTTGCAACAACGGGCCAATGATGAAAATTCCAACAATTTCGAATGCAGCCGATACGAACCATTGGCCAACACTGATGATCTCAATTCGTCTACGGACAAATCGCTTCCAAAGgcatttcaaaatcaacaacaatcgaTTACATATTTTGCTCCCATTTCACAACAAACGTCGCACCAATTGATGATTGTAAATGGTACTCAGGTTTTTCATGATCAACGTCATCGTCGCATTGGAGTTACATCACAGAGTTGTTCGACTCCAATTTCACATCGTACGGGAACAGTGCCACCACTGTCGATTCCGGCACGGACATTTCGACTGATTCCAGCTAAACAAGCAATaccgccaccaccaccataTCATGCATCCGTTCGGAATGCGATTCATCgcaatgaaatcaatcaaattaccacacaaattcaacaaaGCTGTTCCACGAATGTTTTCAATGTGTCGGCGTCGAGCAGTAGCAGCAGTAGCACGCTTACCACCAATATAAATGCGATAAATGCATCGAATAGTTCACAatatgaaaaccaaaattcaacTAAACGGCTCGAAAAAATTGGACCCAATGAAACCGGTGCAAGTGAAGAAGATCAATTGAATGGCGATGAGCTAGCCAATAGTAATGACtttgaaaatgacaatgaacATATTGATGAAATCAGTTCAGATGTCGATGGTGATGAAAATGAGTTCATTAGTTGTAATGAGACACAAACAGAGAGACCAACGAAGAGCAGTGAATATCGAAAACAACGTTCAAAGCAACAGCATAAGGATAATAGTATGGAAAGTGGGTCTGATAGCAATAAAGAAACGCGTAGTTTCAAGGAAGAAACTACCGACGCATTGACCGGTGATGGTGAAACcataaatgaaaagagaacACACGGTCTGAAAGTATTGAGCAACGTTCAAGTTTCGCCAAATGCTATACTTAATGTTTCGCttaattcaacaaataaagaaaCGATCCCCTTGAATAATATGATAATTGTCAGTTCAATACCATCTACATCAACCGGAACTACCTCACAGGTGCTACCGACTCAACTAATAAGATCACAATCACTTCTAAAGACTTTGAATGAATCACGTTCACCATCGGATGCTAAAAATCCGAAACATACCAAAGCAAACATTGAAattgCCTCAACAAGTTCAGCCGAACAACACAATAACGAAGATGACGATAATCAATTGGTTGATCCACTTGCTCTGGACGAAAGGAATACCAGCGACGAATGTTTCATAAAACCATGTTCAAGCAAAGCAACTAGCGTAATTCGTTTGGCATCTCAAAAATCGCCAAAACCATCGTCATCGACGACTGACACTGCAAGACCAACTAATCGTCAATCGGTTAAAAAATTGGTTGTTAAACTTAAGAAGCCATTTGTTCCAGTAATCGAAGAAGAAGCCAATTTGCATCCTCCTGatgaacattttgataatCGTACGGggaacaattcatttgaaagcaCAAGTAAAAATGAGAATGAGGTTCTGCTTGAGTGTTCTGAAGATGTACCATTTAGTCCACTTCGACAATCATATACGCCGCTTCCAATGAATCAATCGAACGATAACGACGACGATGAGGATGATTTGATAATTCCCGATTGTGATCCATCGCCTCGAAATTATCCAAACGATTCACAGAACGAACTACATATGATTGATATCAAATTAAGTCAACAAATGCTTGATATTGCTGATCACGACCAACCATCCGAtgcgaatgaaaatgtaaatatgtcAATTAGTAAAGAAGACGTCGTTCTTTTCACGATTAATGCTGCAAATGATGaagAACATATGGACGAAACAGAAGAAATTCATATCACAGCAGCAAAGACGTATTTAGAAAAATCatcgacgacaacaacaagtTCCGAGTGCACCTCATACGCATCATCATCGTCAGTGTCGAATCTGGGGCCAGGCTCTTCTCAAAACGAGTTTCATAGCATCGCTGGTACGAGCCGAATGAAATTTCTAGATTACAATGAACAACGATTGCGTGTACGATTGTCTCCGATACCCTTTGTTGGCGACAACAATGCATGGAATCAAACGTTCAGTTCGTCTTATGCATCAGCCGGCGAAGAGAATTACAAGCATTGCATGGACATGGATAGTTGTAAAACGAATTCAGTTAGTGCACGTGCACCATCAACCGATAGTCTGAACATACGTACAGATGAAAAGATGCCAGCTAAAGGTGAAATATCGGAGCAAGAGAGCAATGGTGATGTTGAAGGTTTATGGAGCCATCAGGTGTATTCGACTGAAAACGATAACATGCCCAGATATACAAATTCATATGACACAACGGTGGCGCGTGAAAGTTGGAGTTTAAGTAATGAACAACATTTATCGcacgaaatggaaaatatgtcaacaattttaatgaaattCAGTTCGTTGGAACAAACGGATCGTAATATGGATATAAAGCCATTTGTTGGCAATaatatttgcaatgaaaagGATATGCTGAAGGCATCAAAATCATTGACAAAAACGCGAAAATATCGTTGTCCGATATGTGCGCAAATTTTTGCAACGCTTAAGGAGAAACGTgcacatttgatttgtgtgcaTGATTATCAGCAGGGTGTGTCGGTGACAAAAACGACCGCAAAAGCaatgaaattcacaaaaataaaaaaacccaCCGAAACAATAACAAGTGCCAGTTGTTCAACGTTGGATACAACGGAAACGCCGGTGATCGAGTGTAAGAAAGAGCGTTCGGACACATTGAGACCATTCACTAGTCTCAATAATTATCTTTTAAGTTACAATTGGTCAACATTGAAATCACGACCAACTGATGGTACAAAGGATGAAAATAAGACGCTATTTGAAATTCTTGACAGCGGCGTGAATTATGTGTGTAAGGTGTGTGAAGAGCAATTCAACAGTATTCGAGCATATGATATGCACATGACAACCCATCCAGCCGAATGTTATACGTGCGGACGCACATTTAAGCGTTGGGTTAATTTCAGTATTCACTTAAAGCGGCACTTAAACATACGCGAACATCGTTGCATCCATTGTCCAAAGCGTTTCGTATTGAGACAGAGTATGATCGAACACATGAGAATTCATAGCAATGAGGCGCCATTAAAATGCAGTTTATGCATGAAACGCTTTAAgcgtttttcaaatttgatacAGCATCGCAATCgacatcatttaaaattgcgGCCACAGGCCAAAGATTTTATATGTTCATGCGGTGAAGTGTTCCATTCACAGGCAAAAATTGCCTGGCATCGTGAAACGCACGACGTTAAGCCAAAGTGCTGTCCGTATTGTCGTGAACGATACATGCACAAAAATAGCTTAGTGAAACACATTCGATTATCGCATACCGaacgttttcatttattcaaacgTGATTCGGTCGAATGTCCGTATtgcaaaaagaaatacataaaATCTAGTCTTAAAATGCATATGGAACAGCATAAAACATCTCGAACCACATACGAATGTACGATTTGTAATAAGACGCTTacaacaaaatggaatttaaagcAACATAAATGGATACATGCCAGCCGATCGTCGAAGccattcaaatgcaatatgTGCACGAAAGCATTTATACGTGAAAGTGAATACATTTCACACATGAACACGCACAAAGCAATTAAGCCGTACACTTGTGATCATTGCGGTTGTCAATTTGCACGAAAATACAATTGGCTACGACATACACGTGAACACGAAACACTCAAGAAATTCCGTTGTGATACATGCGGCAAGGACTTCCATCGTGCATACTATTTAAAGGAACATAAACGCATTCATACGGGCGAACGACCATTCGAATGTGTTATCTGTGGAAAAACGTCGACGACTAAAACCAATCACAATAAACACGTTAAAATTCATCATGCTCGCGATCCGCTCACCGCTGAAgcatga
- Protein Sequence
- MDSQIQCPVCTLYLHVGMNLQDHLNTHPKDQVISALVNMTLLQQRANDENSNNFECSRYEPLANTDDLNSSTDKSLPKAFQNQQQSITYFAPISQQTSHQLMIVNGTQVFHDQRHRRIGVTSQSCSTPISHRTGTVPPLSIPARTFRLIPAKQAIPPPPPYHASVRNAIHRNEINQITTQIQQSCSTNVFNVSASSSSSSSTLTTNINAINASNSSQYENQNSTKRLEKIGPNETGASEEDQLNGDELANSNDFENDNEHIDEISSDVDGDENEFISCNETQTERPTKSSEYRKQRSKQQHKDNSMESGSDSNKETRSFKEETTDALTGDGETINEKRTHGLKVLSNVQVSPNAILNVSLNSTNKETIPLNNMIIVSSIPSTSTGTTSQVLPTQLIRSQSLLKTLNESRSPSDAKNPKHTKANIEIASTSSAEQHNNEDDDNQLVDPLALDERNTSDECFIKPCSSKATSVIRLASQKSPKPSSSTTDTARPTNRQSVKKLVVKLKKPFVPVIEEEANLHPPDEHFDNRTGNNSFESTSKNENEVLLECSEDVPFSPLRQSYTPLPMNQSNDNDDDEDDLIIPDCDPSPRNYPNDSQNELHMIDIKLSQQMLDIADHDQPSDANENVNMSISKEDVVLFTINAANDEEHMDETEEIHITAAKTYLEKSSTTTTSSECTSYASSSSVSNLGPGSSQNEFHSIAGTSRMKFLDYNEQRLRVRLSPIPFVGDNNAWNQTFSSSYASAGEENYKHCMDMDSCKTNSVSARAPSTDSLNIRTDEKMPAKGEISEQESNGDVEGLWSHQVYSTENDNMPRYTNSYDTTVARESWSLSNEQHLSHEMENMSTILMKFSSLEQTDRNMDIKPFVGNNICNEKDMLKASKSLTKTRKYRCPICAQIFATLKEKRAHLICVHDYQQGVSVTKTTAKAMKFTKIKKPTETITSASCSTLDTTETPVIECKKERSDTLRPFTSLNNYLLSYNWSTLKSRPTDGTKDENKTLFEILDSGVNYVCKVCEEQFNSIRAYDMHMTTHPAECYTCGRTFKRWVNFSIHLKRHLNIREHRCIHCPKRFVLRQSMIEHMRIHSNEAPLKCSLCMKRFKRFSNLIQHRNRHHLKLRPQAKDFICSCGEVFHSQAKIAWHRETHDVKPKCCPYCRERYMHKNSLVKHIRLSHTERFHLFKRDSVECPYCKKKYIKSSLKMHMEQHKTSRTTYECTICNKTLTTKWNLKQHKWIHASRSSKPFKCNMCTKAFIRESEYISHMNTHKAIKPYTCDHCGCQFARKYNWLRHTREHETLKKFRCDTCGKDFHRAYYLKEHKRIHTGERPFECVICGKTSTTKTNHNKHVKIHHARDPLTAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01288451; iTF_00133639; iTF_01351016;
- 90% Identity
- -
- 80% Identity
- -