Aaph005869.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059997.1:14268297-14273659[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 94 3.9 0.3 2 23 6 27 5 27 0.93 2 14 0.0047 0.26 11.9 0.3 1 23 911 934 911 934 0.95 3 14 0.015 0.84 10.4 0.3 1 23 1032 1054 1032 1054 0.98 4 14 2.9e-05 0.0016 18.9 1.2 2 23 1057 1078 1057 1078 0.97 5 14 0.037 2.1 9.1 3.0 1 23 1084 1106 1084 1106 0.95 6 14 0.0034 0.19 12.4 5.3 2 23 1113 1134 1112 1135 0.94 7 14 0.99 55 4.6 0.5 5 23 1148 1166 1147 1166 0.96 8 14 0.0036 0.2 12.3 4.9 3 23 1173 1194 1171 1194 0.95 9 14 0.005 0.28 11.9 0.8 2 23 1207 1227 1206 1227 0.95 10 14 0.00012 0.0069 16.9 0.7 1 20 1234 1253 1234 1256 0.94 11 14 4.7e-06 0.00026 21.4 1.0 1 23 1264 1286 1264 1286 0.99 12 14 0.00019 0.01 16.4 5.3 1 23 1292 1314 1292 1314 0.98 13 14 8e-05 0.0044 17.5 3.5 1 23 1320 1342 1320 1342 0.98 14 14 0.0088 0.49 11.1 4.3 1 23 1348 1370 1348 1371 0.95
Sequence Information
- Coding Sequence
- ATGGATTCACAAATTCAGTGTCCGGTTTGTACACTATATCTGCATGTTGGAATGAATTTACAAGATCACCTGAACACACATCCAAAGGATCAGGTGATTTCGGCACTTGTGAATATGACACTGTTGCAGCAACGTGCCAACGATGAAAATTCCAATAGTTTTGAGTGTAGCCGATATGAACCATTGGCAACCGATGATCTCAATGCGTCTCCGGATAAAACACTACCCAAAGGgtttcaaaatcaacaacaggCCATCACGTATTTTGCGCCGATTTCACAGCAAACATCGCATCAGCTAATGATTGTGAATGGTACACAAGTTTTCCATGATCAACGGCATCGACGCATCGGCGTCACATCACGTCAGAGTTGCTCGACACCAATCTCACATCGTAGCGGCTCAGTGCCGCCACTCTCAATTCCAACACGTACATTTCGACTGATTCCGGCCAAAAGCTATGATGGTAAAATAACACAAGCAATACCACCGCCGCCACCATATCATGCATCGGTTCGAAATGCAATCCATcgcaatgaaatcaatcaaattaccACACAAATTCAGCAAAGCTGTTCCACAAATGTGTTTAATGTGTCTACATCAAGTAGTAGCACCGTAACAACCaatattaatgaaataaatgcatcGAGCAGTGCAGTGTATGTGAATCGAAGCCCAGTAAAGCAATTGGAACAGGGTGGAGATGAACATGAAACGGAAACGGAAACAGAAACTGAGACCATTGAACAGGATCAATCGATTACGGATGAAATTATAACAGCCGACGATTTTGACGATCAGAATGAGACGAATGTTCGAACGgaaccgaatgaaaatgagcttGTTAACCAAATTGAAGAGCCATATGGGAGGCCGGCCAAACAAAATGACCATCAAAAACAACGACCAAAGCAGCATTTGGCTACTAGTGATTCAACGACTGAACCAACAACCAGCAAAGAAACCAGAAATACATTCAAACAGGAGTCGATCGATTCATTGGCGGCCGATGTCGAGAATGCCAATGAAAAGAGAACACGCGGTCTCAAGGTATTAAGCAATGTTCAGGTTTCGCCAAATGCAATACTTAATGTTTCATTGAACTCGGCCAACAATGAATCGATCCCATTGAATAATATGATCATTTTGAGTTCAATACCATCCACATCAACTGGAACTACCTCACAACCGGCGCTGTCATCACAGCTCAtcaaatcacaatcacaatcacTGCTGaagaatttgaatgaatcacgTTCGATGTCAGAGACGCGAAATTCAAAACATACCAAAGTAAATGTTGAAGTTCCTTCGACAAGTtcggaaaaacaaaaaactaccGACAAAGATGAAGACGTCAATCAATTGGCTCTTGATCCACTTGCATTAGATGATAGAAATACAAGCGATGAGTGTTTTGTAAAACCATGTTCGAGCAAAGCAACTAGTGTAATTCGTTTAGCATCTCAGAAATCGCCaaaaccatcatcatcatcatccacatcatcatcaacaactgaaaatgttCGGCCGGTAAATCGTCAATCGGTGAAAAAATTGGttgtaaaattaaaaaaacctTTTGTTCCGGTTATTGAAGAGGAAGCAAATTTGCATCCACCGGACGAACACTTTGATAATCGAACAGGAAACAGTGCATTCGATGGCATaaataagaatgaaaatgaagtatTGTTGGAGTGTTCGGAGGATGTTCCATTTAGTCCACTGCGTCAATCATATACACCGCTTCCAATGAATCAATCATATGGCAATGATACGGACGGAAATACAAGCGTCAATTGTAATTTGTCAGgccaaaattattcaaatgattcggACAGTGAGCTGCACATCATCGATATTAAACtgaatgaacatgaaatgGTCGATGTCAATGATTATGACCAACCAGTTGATAATATTAATATGTCCATTAGCAAAGAGGATGTTGTGTTATTTACAATTAATGCAGCTAATGATGACGAGCACATTGATACAATCGATGAGACACAAATCACAACGGCCAAAACTTATTtggaaaaatcatcaacaacaaccaataGCTCAGAGTGCACCTCATACGCTTCATCATCGTCGGTGTCAAATCATGAGCCGAGCtcatcacaaaatgaattccaaagCATTGCTGGAACCAGCCGTATGGAATATGGTCTGACTACGTTCCTTGATTACAACGAACAACGCTTGCGTGTTCGATTATCACCCATACCATTTGTTGCTGACAACAATACATGGAATCAAACATTCAGTTCATCGTATGCATCGGGATGTGAGGAAGGCTATAAGCATTCATCTTGCATGGATATTGATGGATGCAAAACCAATTCGGTAAATGCACGTGCACCATCAACAGATAGCCTGAACATTCGAACTGATGAAAAGATGCCGGCAAAAGGTGAAATTTCCGAGCAAGAAAGTAATGGGGATGTTGAAGGGCTCTGGAGTCATCAGGTATATTCAACTGAAACGGACAATGTGCCGCGTTACACAAACTCATACGATACAACGGTGGCTCGTGAAAGTTGGAGTTTAAGTAATGAACAGAATCTAACGCATGAAATGGAGAATATGTCAactattttgatgaaattCAGTTCATTGGAACAATCGGATCGTAATATGGATATAAAACCGTTTGCTGGTGCTACAATatgcaatgaaaaagaagTGATTAAAGACAAAACGTTGGCAAAATCGCGCAAATATCGTTGCCCAATGTGTTCTCAGATCTTTACATCGTTGAAGGAGAAGCGAGCCCATTTAATTCAAATCCATGATTACCAGCAGGGTGTGTCTGTGACAAAAACCGCCGCAAAAGCCATAAAATTcacgaaaatcaaaaaaccCACCGAAACGATAACCAGCGCGAGCTGTTCGACGCTGgatacaacagcaacacctGTGATCGAGTGTAAAAAAGAGCGTTCGGAAACGATGCGACCGTTCACAAGCCTCAACAATTATCTATTAAGCTACAATTGGTCAACACTGAAATCACGGCCAACCGATGGAAGCACAAAGGATGAAAATAAGACATTATTTGAGATTCTTGACACGGGCGTGAATTATGTGTGTAAGGTGTGCGAAGAGCAGTTCAACAGTATTCGAGCATATGATATGCATATGACAACGCATCCGGCTGAATGCTATACATGTGGCCGCACATTTAAGCGTTGGGTTAATTTCAGTATTCATTTAAAACGACACTTGAATATCCGTGAGCATCGTTGCATTCATTGTCCGAAACGGTTTGTGCTGCGTCAAAGTATGATCGAGCATATGCGAATCCATAGCAATGAGGCGCCGTTAAAATGCAGCCTATGCATGAAACGTTTTAAACgattttcgaatttaattcaacATCGGAATcggcatcatttgaaattacgACCGCAGGCCAAAGATTTTATATGCACGTGCGGTGAAGTGTTTCATTCACAGGCGAAAATCGCATGGCATCGTGAAACGCATGATGTTAAACCAAAATGTTGCCCATATTGTCGTGAACGatttatgcataaaaataGCTTAGTTCGACACATTCGTTTATCGCACACCGAAcggtttcatttatttaaacggGATTCGGTCGAATGTCCATATTGTAAAAAGAAGTACATCAAATCTAGTCTGAAAATGCATATGGAACAGCATAAAACATCACGAACCACATACGAATGCACAATTTGTAATAAAACATTGACaacgaaatggaatttaaagCAACACAAATGGATACATGCGAGCCGATCATCGAAACCATTCAAATGTAGTATGTGCACAAAAGCATTTATACGCGAAAGTGAATACATTTCACATATGAACACGCACAAAGCGATTAAACCGTACACATGCGATCATTGTGGTTGTCAATTTGCACGCAAATACAATTGGTTGCGACATACACGTGAACATGAAACACTTAAAAAATTTCGCTGTGATACATGTGGCAAGGATTTCCATCGTGCATATTATCTGAAGGAGCATAAGCGCATCCATACAGGGGAACGGCCATTTGAATGCGTTATTTGTGGTAAAACGtcaacaaccaaaaccaatcacaataaacatgtgaaaattcatcatGCTCGCGATCCACTCACAGCTGAAGCctga
- Protein Sequence
- MDSQIQCPVCTLYLHVGMNLQDHLNTHPKDQVISALVNMTLLQQRANDENSNSFECSRYEPLATDDLNASPDKTLPKGFQNQQQAITYFAPISQQTSHQLMIVNGTQVFHDQRHRRIGVTSRQSCSTPISHRSGSVPPLSIPTRTFRLIPAKSYDGKITQAIPPPPPYHASVRNAIHRNEINQITTQIQQSCSTNVFNVSTSSSSTVTTNINEINASSSAVYVNRSPVKQLEQGGDEHETETETETETIEQDQSITDEIITADDFDDQNETNVRTEPNENELVNQIEEPYGRPAKQNDHQKQRPKQHLATSDSTTEPTTSKETRNTFKQESIDSLAADVENANEKRTRGLKVLSNVQVSPNAILNVSLNSANNESIPLNNMIILSSIPSTSTGTTSQPALSSQLIKSQSQSLLKNLNESRSMSETRNSKHTKVNVEVPSTSSEKQKTTDKDEDVNQLALDPLALDDRNTSDECFVKPCSSKATSVIRLASQKSPKPSSSSSTSSSTTENVRPVNRQSVKKLVVKLKKPFVPVIEEEANLHPPDEHFDNRTGNSAFDGINKNENEVLLECSEDVPFSPLRQSYTPLPMNQSYGNDTDGNTSVNCNLSGQNYSNDSDSELHIIDIKLNEHEMVDVNDYDQPVDNINMSISKEDVVLFTINAANDDEHIDTIDETQITTAKTYLEKSSTTTNSSECTSYASSSSVSNHEPSSSQNEFQSIAGTSRMEYGLTTFLDYNEQRLRVRLSPIPFVADNNTWNQTFSSSYASGCEEGYKHSSCMDIDGCKTNSVNARAPSTDSLNIRTDEKMPAKGEISEQESNGDVEGLWSHQVYSTETDNVPRYTNSYDTTVARESWSLSNEQNLTHEMENMSTILMKFSSLEQSDRNMDIKPFAGATICNEKEVIKDKTLAKSRKYRCPMCSQIFTSLKEKRAHLIQIHDYQQGVSVTKTAAKAIKFTKIKKPTETITSASCSTLDTTATPVIECKKERSETMRPFTSLNNYLLSYNWSTLKSRPTDGSTKDENKTLFEILDTGVNYVCKVCEEQFNSIRAYDMHMTTHPAECYTCGRTFKRWVNFSIHLKRHLNIREHRCIHCPKRFVLRQSMIEHMRIHSNEAPLKCSLCMKRFKRFSNLIQHRNRHHLKLRPQAKDFICTCGEVFHSQAKIAWHRETHDVKPKCCPYCRERFMHKNSLVRHIRLSHTERFHLFKRDSVECPYCKKKYIKSSLKMHMEQHKTSRTTYECTICNKTLTTKWNLKQHKWIHASRSSKPFKCSMCTKAFIRESEYISHMNTHKAIKPYTCDHCGCQFARKYNWLRHTREHETLKKFRCDTCGKDFHRAYYLKEHKRIHTGERPFECVICGKTSTTKTNHNKHVKIHHARDPLTAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00367504;
- 90% Identity
- -
- 80% Identity
- -