Cnas010267.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- PAXBP1
- Assembly
- GCA_009176525.2
- Location
- NW:3742483-3748747[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.64 4.4e+03 -3.4 0.0 69 106 236 273 230 281 0.64 2 3 0.22 1.6e+03 -1.9 0.0 70 122 451 501 425 544 0.53 3 3 6.1e-35 4.2e-31 108.2 1.8 1 272 628 839 628 841 0.94
Sequence Information
- Coding Sequence
- ATGTCCTTGTTTCGACGTCCTAAGAAACCGGTTGTAAATCGTCGAGTGTTTAGTGCTGCTGACGATGATGACCACAgtgaaaatttggaaaatgaaaatagcgGTCGAAAGAATGGTGAAGACTGTTCAAAAATGGATGTGGACAGTAGAGTGACAACACCTCCTCCACCTTGCATAAGTGATTCGCGTAAACATGACAAAAAGTCGAAAGACGATAAGAAGACAAGTAGTAAAAAATCATCACTACTAAGTTTCGGCCATGATGAAGaGGAAGAAACTGAAGTGTTTCAGGTGAAAAAATCATCTCAATCAAAAAAGGTTATGAAGATGCTAGACAAAGAGCGGCGCAGGAAAAAACATCGAGAAAAAGATTCATCAACCTCAGTGGCCGATGAATTCACGTCGCATGACAATTATGGCAAAACCAACAACggtttcaacaacaaaacaaatgcatatGACGTTGTTCGGGCAACGTCATATGAAAGAGCTACGTCCAATATGGACGATGGCAACGATGATTTGGCCAATAAAAAACGGTCAAAATCATCACAAATTTCCAATTCTAGCATACATACTGAAATACGCACTGACGACTTTGTGCTTGTGGTTAAAAAGACGGAAAATGAAACAGGTCTTGTGTTGAATGGTCGAGCAGCTCTTTGTGCGGGACGTGATGATATGTCATCTGAAGATGATTCGGATACGACAAATGAACACCGTTTCAGACAGCCAGACAGTTTTAAGGCTTTACTTGAGAGTGGTGCCATTCCGGATGCACGAATGATTCATGAGGCGCgtaaaaagagacaaaaagcGCGTGAATTAGGTGATTTCGTACCGGTTGAAGAGAATAAACCGGTTGACAATAAGAAAGGCCGTCTAATACGTGAAGAAGCCGAAGATGATGCATCAGACGATGAGCGAGTCGACATGTCGGCTATCACTGGGCAAAAAGAGTTGGAAGAGAGACGTGAAAAATTCTATTCGGTTCAAGGACAAGgTTCTGATGAGGATTCTGATTTGGACATGCATGAATGGGAGAGTCAGCAAATTCGGAAGGCCATAAGTGGTTCGCAGTTAATAAATGCACAGCAAGAGGCGTATTCACATTTCATAATAAGGGATGGTTCAAATGATTCATCTGCCGGTGTAGTTGCGCAAGTTTCAACTAGAAATTTATTGGAGAAAGCttatgcaaattcaaatattcagaAATCGCAATCcatcaaaacaaatcaaaagtcagaaaaaaaatcgggcCCTCGAATGCCCAACGAAATTCGCGACTTGGTTAAAGAGCGACTAAAACAAGTAAAAGAGTTGAATAACACGCATTTgaatcaaatccaaaaaatcACCAACGATATGAATGCAATCGCATTAGAAGAACTGGAATGTGAGCAAAATGCACCGATTGTTGCATCAAAATATCGATTCTATCAAGAGCTCAAAGGCTATGTACTGGATCtgattgaatgttttgatgaaaaacttcccaaaataaatgaattggaGCGAAAACATGTTGCTGCTGTggtgaaatattcaaattttcttattGAACGTCGACGTCAAGATGTTCGCGACCAAGCCAGAGAAGTAACCCAGACACAAAAGCCCACTAATTTGGCATCAATGAATAGTGCAGCTCGAAAGGAAGAAGAACAAAGAGTGCAACGCACTGCTGAGAGAGAAGGGAGAAGAACTCGACGACGAAGAGATCGTGAACGCAAAGAGACTCCAAATGACCATCTCGATGGTATGTCTAGTGATGACGAAATTCCTGATCATGAGAGCACTTTTTATAAGAACCAATTGAAACAAATAAGTGCTGAGGCAACACTGGTGTTCGAAGATGTCACAGATGATTACTCTGATTTAGGAACAATTTTGAAGCACTTTGAGGATTGGCGCAATCGCGATCTTGATTCTTACAAAGATACTTATTTCAGTCTTTGCTTACCGAAGATCATTGGTCCGATGTTGAGATTACAACTGTTGACTTGGAATCCACTGGAGAATGATTGTAAAgatttggaaaaaatggaGTGgtatgAGACCGTTATGAAGTACGGATTTAAACCAAACGAAACAGTAGCTCAGTTGTTTGATGATCCAGATATTCGATTGGTGCCAACATTAATGGAGAAAATAGCTCTACCAAAAATAACCGaattcattgaaaagGCTTGGGATCCGCTATCTTCTACGCAAACACTCCGTTTAGTTACTTTAATAAAACGATTGATTGACTGTTATCCGTCACTAAAGCCAACGTCCAAATATATgcgaaatttatttacaataattttgGATAGAATGAAAGTATCACTTGAGAACGATGTATTCATACCGATATTTCCGAAGCAGTTACAAGAAgcaaaaacatcatttttccAACGGCAATTCAGCAGTGCGTTGAAACTCTTTCGAAATCTATTGAGTTGGGAGGGAATACTTTCTGATAGTGCCCTAAGGGAAATAGCCATATCGTCTTTGCTTAATCGATACTTACTGTCAGCAATACGGATATGTACACCGATGGATGCAGCGAACAAATCACACATAATAATCAACACATTGCCTTGTGTTTGGCTCCAGCAAAGCTCCATACTTACCAGTCTGGACTTATTTATTCAGTTCTTACGATCCCTGATGACCCAACTAGAGACCGATAATCCTTTGCATAGCGGAGCGATTATGAAAACGAAGCAAATTTTCGAGACGCTTCGATTACCAATGACGCCGTctaattga
- Protein Sequence
- MSLFRRPKKPVVNRRVFSAADDDDHSENLENENSGRKNGEDCSKMDVDSRVTTPPPPCISDSRKHDKKSKDDKKTSSKKSSLLSFGHDEEEETEVFQVKKSSQSKKVMKMLDKERRRKKHREKDSSTSVADEFTSHDNYGKTNNGFNNKTNAYDVVRATSYERATSNMDDGNDDLANKKRSKSSQISNSSIHTEIRTDDFVLVVKKTENETGLVLNGRAALCAGRDDMSSEDDSDTTNEHRFRQPDSFKALLESGAIPDARMIHEARKKRQKARELGDFVPVEENKPVDNKKGRLIREEAEDDASDDERVDMSAITGQKELEERREKFYSVQGQGSDEDSDLDMHEWESQQIRKAISGSQLINAQQEAYSHFIIRDGSNDSSAGVVAQVSTRNLLEKAYANSNIQKSQSIKTNQKSEKKSGPRMPNEIRDLVKERLKQVKELNNTHLNQIQKITNDMNAIALEELECEQNAPIVASKYRFYQELKGYVLDLIECFDEKLPKINELERKHVAAVVKYSNFLIERRRQDVRDQAREVTQTQKPTNLASMNSAARKEEEQRVQRTAEREGRRTRRRRDRERKETPNDHLDGMSSDDEIPDHESTFYKNQLKQISAEATLVFEDVTDDYSDLGTILKHFEDWRNRDLDSYKDTYFSLCLPKIIGPMLRLQLLTWNPLENDCKDLEKMEWYETVMKYGFKPNETVAQLFDDPDIRLVPTLMEKIALPKITEFIEKAWDPLSSTQTLRLVTLIKRLIDCYPSLKPTSKYMRNLFTIILDRMKVSLENDVFIPIFPKQLQEAKTSFFQRQFSSALKLFRNLLSWEGILSDSALREIAISSLLNRYLLSAIRICTPMDAANKSHIIINTLPCVWLQQSSILTSLDLFIQFLRSLMTQLETDNPLHSGAIMKTKQIFETLRLPMTPSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00133240;
- 90% Identity
- -
- 80% Identity
- -