Cpun024471.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062106.1:1889439-1891790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.1e-05 0.0009 20.2 5.9 1 23 8 31 8 31 0.95 2 22 0.00032 0.025 15.7 0.3 2 23 37 59 36 59 0.95 3 22 5.2e-07 4e-05 24.4 0.3 2 23 68 90 68 90 0.97 4 22 1.8e-06 0.00014 22.7 1.9 2 23 99 121 98 121 0.95 5 22 1.7e-05 0.0013 19.6 0.5 2 23 129 151 129 151 0.95 6 22 3.5e-06 0.00028 21.8 0.7 2 23 159 181 158 181 0.95 7 22 7.8e-06 0.00061 20.7 4.1 1 23 187 210 187 210 0.98 8 22 0.15 12 7.3 2.2 1 23 218 241 218 241 0.95 9 22 0.0018 0.14 13.3 0.2 1 23 260 283 260 283 0.95 10 22 0.00031 0.024 15.7 2.3 1 23 312 335 312 335 0.98 11 22 1.3 98 4.3 0.5 2 21 343 362 342 363 0.92 12 22 0.019 1.5 10.1 2.2 2 23 372 394 372 394 0.95 13 22 0.0021 0.16 13.1 5.4 1 23 418 441 418 441 0.97 14 22 1.5e-05 0.0012 19.8 0.9 2 23 448 470 447 470 0.96 15 22 0.00019 0.015 16.4 2.0 2 23 477 499 476 499 0.94 16 22 0.0077 0.6 11.3 2.2 1 23 505 528 505 528 0.97 17 22 0.24 19 6.6 4.8 2 23 536 558 536 558 0.95 18 22 0.00014 0.011 16.8 0.2 1 23 565 588 565 588 0.97 19 22 0.005 0.39 11.9 0.1 1 19 595 613 595 616 0.95 20 22 0.018 1.4 10.2 2.7 3 23 633 654 632 654 0.91 21 22 2.9 2.3e+02 3.2 0.2 2 17 675 690 674 691 0.89 22 22 1.7 1.3e+02 4.0 0.2 1 13 704 716 704 721 0.82
Sequence Information
- Coding Sequence
- ATGTATCAAAACCTCCTCGATTTCATATGTGATTACTGCAACCGAACGTTCACCAGGAAGCACAACCTCCAAACGCACATTGAAAACTGCCATCTTAACTCCTCATGCTATTGTGATATATGCGACCAGCGCTTCGGAAGCCCCGCAGGCCTCCAACTGCACTTGAACCGAGGTCACAACAGGCACGCCCAACCGAACCCAGAATGCGACATATGCGGCAGAATCTTCACAAGGAAACAGAACCTTATGTCTCACATGATAACGGTGCATTTCCAAGGGAATGTGCAGCAGATAAGGTGTAGTCTGTGCGAGAAGACTTTTACCACGGAGAAGAATTTGAGGAGACATATGAATTATCAGCATAACCCTGATGTCCAGTACCCGACCTGCGATGATTGTAACAAAGTTTTCAAAGGCAAACACTCATTGATAGCGCACATACAAGCTATACACGCTTCTGGAAAAGGAGTTATCAAATGCCTCATGTGTGATAAAGTGTACACGAATAACAGGAATCTCAAGAGGCACATCGAAATCTTCCACGGTGATAAAGGGGAATTCAGGTGTGATCTCTGTCCTAAGGTGTACACTTCCAATCACAGTTTGAAGCGGCATACGAAGACCAGACACTGTTCAGAAGATACCGATCAGTATACTTGCGAATATTGCTTCAAAAATGTCCATGGCAGAGAGAATCTGGATACACACATAACGAACTTTCACAAACTGGATAATTCAATGGATTGTAGCGACGTCGCATCGACGAAAACGAACGATTTCCTATGCGAATTGTGCACTAAATCTTTTGAAGAGGAACCCCTTTTGAGACAGCATGTGAAGACCGAGCATTCGTTCAAAAGTTTCTATAAGTACTGCAAGAATTTCCTTCTGAAACAGATGGGGCAAGGACAGGAGACGACTGAACTGATTCTATACAAATGCGAGTACTGTGCCCATTCTTTCATGAGCGTATATGAACTGAAAGATCACATGAAGATGAGTCACGAGAAAGAGTATAGCTTGTCCACTTGCAACGTATGCTTCAGCAAATTCTATAGCAAGGAAACAATGGCTGACCATAAGAAAATATGCCTGCCTCCCCCTAACGTGAACTCCTGTAGCCATTGCGACAAACTCTTCACAGATATATCGAGTCTAGAATTCCATACGAGGATTTTCCACCCCCAAGCTCAAATCGCCGACTCGAACATAACTTCCACGAATGAAAACGACGCTTTCGACGCGAACGCCTACAAATGCGAACATTGCGATAGGATTTATTACAGCGATAGGTCCTTGAAGCATCATATAAAACTGAAGCACACGACTGACGAAGCCATGGAATGCCAGTATTGCGGAAAAATCTGCAGCAACAAGTATTACCTTGCGTCTCACATCAAAATCGTTCACAGCAACGATAATTGGTCGAAATGCGGATACTGCGAGAAGCAGTTCAAATCCAAACGAAACATACGCCGCCATATAGAGTATACTCACAGAGGCATACAAAGATATAAGTGTATCGAATGTGAGACCCTTTTCAAAGAGAAACGCAGCCTCCGAAAGCATGTTAGAACGAAGCACCCCAACTCTACTGCGTTCCCTCAATGCCATATCTGCTATAAGCGATTCGAGTCTGCGAAATCTTGCAAGATTCATTTGAAACTACTGCATTCTTTTAACATGAACACTTTTCCGTGCGACCTCTGTTCGGTCTCGTTCAGTTCAAACGAAGCGTTGTCGATACATTTGCAAACGAAACACTTGGCTGAAGACGTTATATACAAATGTGAGGTCTGTAACCTTGTCTTTAAAGGGCAGGAGAAGTTTGAGCAGCATAATGCTGTGTGCCCTGCCCATTTGGAGCCTAATTCCAAGCAGAAATTGCTGCCAAGATGCATTATATGTATGAAGGATTTCAGCACGAGAAAGACACTAAAAAGGCACATAAAGAAATTCCATGAAGTATTTGATGTGGACGAGTTGGCTACATTCGGATCAAGGCGAAGGGAATTCTTGGTCGAATGTGACGAGTGCTTGAGGAATTTCAACGATGATTCGCATTTCAACTTGTATCAGAAGTTGAAACATTTGAGAGACGCCACTGTATTTAAATGCGAGGATTGTTCGGCGTCTTACAGCCCTCTGGAGTATTTCATACAACGGTATAAGTTGACGAGTTTCGATGTCAGTAAGAGCAAGATGATTTTGAGCGAGCTTTGTACTGCGGAGATGAGCGATGACGAGTCATGTTATACTGGGTTTGGCTCTCTGCATGAGACGATGGAAGCGGAGAGTACTACCAGCGATATTAAGTTGGAACCTGTTGAGGAAATATCGGAAACCGAGTGA
- Protein Sequence
- MYQNLLDFICDYCNRTFTRKHNLQTHIENCHLNSSCYCDICDQRFGSPAGLQLHLNRGHNRHAQPNPECDICGRIFTRKQNLMSHMITVHFQGNVQQIRCSLCEKTFTTEKNLRRHMNYQHNPDVQYPTCDDCNKVFKGKHSLIAHIQAIHASGKGVIKCLMCDKVYTNNRNLKRHIEIFHGDKGEFRCDLCPKVYTSNHSLKRHTKTRHCSEDTDQYTCEYCFKNVHGRENLDTHITNFHKLDNSMDCSDVASTKTNDFLCELCTKSFEEEPLLRQHVKTEHSFKSFYKYCKNFLLKQMGQGQETTELILYKCEYCAHSFMSVYELKDHMKMSHEKEYSLSTCNVCFSKFYSKETMADHKKICLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNENDAFDANAYKCEHCDRIYYSDRSLKHHIKLKHTTDEAMECQYCGKICSNKYYLASHIKIVHSNDNWSKCGYCEKQFKSKRNIRRHIEYTHRGIQRYKCIECETLFKEKRSLRKHVRTKHPNSTAFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCDLCSVSFSSNEALSIHLQTKHLAEDVIYKCEVCNLVFKGQEKFEQHNAVCPAHLEPNSKQKLLPRCIICMKDFSTRKTLKRHIKKFHEVFDVDELATFGSRRREFLVECDECLRNFNDDSHFNLYQKLKHLRDATVFKCEDCSASYSPLEYFIQRYKLTSFDVSKSKMILSELCTAEMSDDESCYTGFGSLHETMEAESTTSDIKLEPVEEISETE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00752276; iTF_00408639; iTF_00408636;
- 90% Identity
- -
- 80% Identity
- -