Cpun016904.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- retn
- Assembly
- GCA_031163375.1
- Location
- CM062094.1:5582214-5591540[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-20 1.9e-16 60.8 0.0 16 89 32 103 27 103 0.94 2 2 4.9 2e+04 -3.3 0.0 25 38 235 248 199 249 0.69
Sequence Information
- Coding Sequence
- ATGAACGCGGCAATTAATCTCTGGAAGGGTGACGGCACCCCCGACCCCCGGGGGATGATTAACAGGCAGGAAGACGGATTGACAAATAGTCGTTTGGGAACCCCAATAAACAGACTCCCGATCATGGCCAAGTCGGTCCTGGACCTGTATGAGCTGTACAACCTGGTGATCGCCCGCGGCGGCCTGGTGGAGGTGATCAACAAGAAGCTGTGGCAGGAGATCATAAAGGGGCTGAGGCTGCCCTCCTCCATCACATCGGCTGCGTTCACGCTGCGTACGCAATACATGAAGTACCTGTATGATTACGAGTGCGAGAAGAAGAACCTGTCAACCAGGAGTGAGTTGGACGCGGCCATTGAGGGGAACAAGCGGGAGGGCCGGCGCGCCTCCGGACAGTACGACGCGCAGGCGGCTCTTGCTATGCCGCCGCTGAGCCGCGTGCCGGCGTCGCTCGCGCAGCTGACGCAGCACATGCAGCCCCTCTCGCTGTCGCTCGCGGGCGGCGTGGGGGGCGTCCCCCGCCTGCCGCCGCTGCCCCCCCACTCGCCCCACATCTCACAGCAGGACATCGAGTTCCGTGTCCGGGAGTATATGAAGATGATACAGCAGCAACGTGACCTGATGAGGAATGGATCCGAATCGCCCCCAGGCGCCAACGCGCCCGCCCCCATCATGTCTCCCCGCGACGCCGCCGCGCTCAGCGCAATCGACGTCTCCCGCCTCACGCTCTGGTCTCtctacaacaacaacaacaacagcccACAGCCTGAGCTGGAGCCACAACGCGAAGCCCTAAACCTCAGCGAGAGCCCCAACTCGAGCACGAGCGGGGGCAAGCGCGAGGCGTGCCGCtccccgccgccgcccgccaagcgccgcacgccgcgcccgccctcCCCCCGCGCGCCCtccccgccgcgcgcgccgcccgcgctcaACGGCGCGCCCGCCAACGGCGTGCACGGCGCCGCCTTCAAGATCACCACCAGAGGAGACGCAAGCACCGGAGACCAGCAACTCGTGGTGTCCATAGAACTTAACGGTGTCACATACGAAGGCGTGTTGTTCCCGTCGCAGAACGGCAACGGACAGAACGGACACAGGCAAATGGTGTCTTAA
- Protein Sequence
- MNAAINLWKGDGTPDPRGMINRQEDGLTNSRLGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPPLSRVPASLAQLTQHMQPLSLSLAGGVGGVPRLPPLPPHSPHISQQDIEFRVREYMKMIQQQRDLMRNGSESPPGANAPAPIMSPRDAAALSAIDVSRLTLWSLYNNNNNSPQPELEPQREALNLSESPNSSTSGGKREACRSPPPPAKRRTPRPPSPRAPSPPRAPPALNGAPANGVHGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00621805; iTF_01125229; iTF_01124383; iTF_01071418;
- 80% Identity
- -