Cpec020991.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596377.1:5227096-5233086[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.86 2.1e+04 -3.8 0.1 36 44 189 197 179 201 0.72 2 14 7e-05 1.7 9.2 0.1 21 50 277 306 272 309 0.88 3 14 0.00052 12 6.5 0.1 23 46 308 331 304 333 0.91 4 14 0.002 48 4.6 0.2 21 50 378 407 373 412 0.90 5 14 4.5e-05 1.1 9.9 0.0 18 43 431 457 423 463 0.81 6 14 0.00059 14 6.3 0.1 21 48 510 537 506 542 0.88 7 14 0.0011 27 5.4 0.0 23 45 541 563 537 566 0.90 8 14 0.017 4e+02 1.6 0.0 21 48 607 634 604 637 0.89 9 14 0.15 3.6e+03 -1.4 0.0 23 43 648 668 645 674 0.75 10 14 0.038 9.2e+02 0.5 0.0 21 52 703 734 697 736 0.83 11 14 0.062 1.5e+03 -0.2 0.1 23 43 733 753 724 757 0.88 12 14 4.6e-06 0.11 13.0 0.2 21 46 759 784 751 795 0.89 13 14 0.013 3e+02 2.0 0.0 21 48 815 842 808 847 0.86 14 14 0.036 8.7e+02 0.6 0.1 21 43 844 866 840 874 0.89
Sequence Information
- Coding Sequence
- ATGTCCGAATCATCTCTATGTAGAGTGTGTCTGACCGATAATATCAGGATGTATGCGCTCAGCAACTCTCGTTATCAAGAGTTATATGAGAAATTAGCAGGCGAAACGTTACTATCAGGTGAGGGTCTGCCTGACTGTCTGTGCATACTCTGCCACTCGCAGGTGCTGAAGTTCTGGAGATTCTTCGAGATGTCGCACAACTCAGAAAAGAACCTCACTAAGATGCTGGAATACGGAGTCAAGTTAAGTCGCTTGTCAGTGGCTCTTCTAGAGCGGGTGAGTGTGcacaacctgtcaataagctctGTCGTACACACGtcagtatttgacattttgaagGAGGAAGCTAAATCGCCTGTCAAGATAGAGGTCTTTTCCGAAGAGAGGAAACTGGATGATCAAATTGAAGatGCTGTATTTGCAGATTTATTAGCTGCTGCTGAGTCGGACGACAATAACTCTGACGTGGATCTACTCGAAGCTGACACTGTCAAAATAGAATCAAACAAAGAAGCTAAACCAATAACTGCATATCCGTGCGAGGATTGCCCGCGTCGATTCGATACAGCAAGAGATTTGAAGCGCCACAGAACCAGTgctcataaaaaatacatatgcaGAAAATGCGACGAAACATTTCTGAACCCAGctcatttaaaaatacatatgaGATATCACAAAAAAGAAAAGTCATATAAAAGTGCCAGCGATGGTATAGATAGAGAGAGTCTTATAATTTCTACAGGAGAGAAGTTCGTTTGTGTTCTCTGCAAGAAGGCGTTCTCTCAGAAAGGTCATTTAAAAACTCATATAATGGCatttcacactggagaaaagccatttgCGTGCGCTGTGTGCGATAAGCGTTTCGTACAAAAAAGCAATCTAAGAACGCACATGAAAACGGCGCACACTTATAAGAAACCGTACACTTGTACCATCTGCAATGGAGTGTGCAATAACGAAAGCCATTTAAAAGAACATATGAGTCTTCACGGTGGAGACAGTTTAGCAATAAACGATAATGATATAAATGAGATCCAAGGAGAGAAACCGTTTGCGTGCGGGCGCTGCGGTAAGACATTTACAGCGAAAGCTCATTTAAAATCCCATATAATGGCCATACACACCGGAGAACGACCGTTTGCATGCACTATGTGTGATAAAAAATACACGCAGAAAAGCCATTTAAGATTGCATGCGAGATTATCACACGTCGTAGAAAAGCCATTCGGGTGTGACGATTGCGAAATGAGATTCGACGATGCCAATGATTTGAGGAAACACGCGAAAAGTCATTCTGAAGAAAAACCATTTACGTGTGACATATGCAATGAGATATTTTTGTCACAGAGCAACTTAAAAAAGCACAATATGACAATTCACAGTGAAACTTCGTTACCAAGTGAAGGTATTGAAGAAACTGTTAAAGTGAAGACAAAGATTAAGCCATTTGCTTGTGTATTGTGTAGCAAAACATTCGGTTGGAAATCTCATTTGAAATCTCATATAATGGCGATCCACACTGGAGAAAGGCCATATGTTTGCACGGTGTGTGACAAGAAATTTGTACAGCAAAGCAATTTAAGACTACACGCTAAAGTCGCACACGATATAGTAAAACCTTTAAACTGCGAGACATGTAATAAAGTATTCCGAAACGAAAACAATTTGAAAGAACATATGACTATCCACAGCGAAGAATCCTTAGAAAACGACAAAAACAACGCTAGAGTAAAGCCATATGCCTGTGTGCTCTGTAGCAAAAGATTTGGCTGGAAATCTCATTTGAAAACTCATATAATGGCGCTCCACACTGGCGAAAGGCCATATGCATGTTCTATGTGCGATAAGAAATTCGTTCAGAAAAGCTATTTAAGGTTCCACATGAAGAACAGTCACCCTGGGGAAAGAGCGACACACTTAATCAACATCGGCAGTCGACCGTATACCTGCAAAGTGTGTTCCGTGAAATTCACAAACAAAATCAACTTTGAAAACCACAAAAGACTTCACACAGACACTCCTCCCTTCCTATGCATAAAATGCGACCAGAAATTCACAACGAAAATCGATTTGGATTCACACAACACGAGTTTACACTCTGGCGAGTTACCATTTACATGCTCAACATGCAATTCCAGGTTTGAAGATGAAACTGCATTGAACAAACATAAGCTTATACACTCTGACGCGAAGCCGTTGTCCTGTGACGTGTGTGATAGAACATTCCTAGCCAATAGCGCTCTGCGACGCCACGCTGTAACACACAGCGACGAAAAACCTTTCGCATGTAAAATATGCAAGAAATCCTTCAAGCAAGACAGGGTCCTCCGTAAACACATGCAAATTCACACAGAGGAAAAGCAATTCGCATGTGACACATGTGATAGAAAGTTCTACCAGAGAGGTAACTTAATAAGTCATATGAGAATTCACTCGGGAGAAAAGCCATTTGTTTGTGATAGGTGCGGGAATAGTTTCAATCAGAAAAGTCATTTGAGAACTCATGTACTGTTTATGCATACGAATGAGAAGCCATTCTCTTGTGGATTGTGCAATAAGCGGTTTAGATTGAAGAGTTGTCTCCGGAACCATCAAATGGTACACACCGGAGAGAGACCTTATCCATGTGATAGGTGcgataaaaagtattataagaAAGGTGAATTGAAATCGCATGTTTTAAAAATGCACTCATAG
- Protein Sequence
- MSESSLCRVCLTDNIRMYALSNSRYQELYEKLAGETLLSGEGLPDCLCILCHSQVLKFWRFFEMSHNSEKNLTKMLEYGVKLSRLSVALLERVSVHNLSISSVVHTSVFDILKEEAKSPVKIEVFSEERKLDDQIEDAVFADLLAAAESDDNNSDVDLLEADTVKIESNKEAKPITAYPCEDCPRRFDTARDLKRHRTSAHKKYICRKCDETFLNPAHLKIHMRYHKKEKSYKSASDGIDRESLIISTGEKFVCVLCKKAFSQKGHLKTHIMAFHTGEKPFACAVCDKRFVQKSNLRTHMKTAHTYKKPYTCTICNGVCNNESHLKEHMSLHGGDSLAINDNDINEIQGEKPFACGRCGKTFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFGCDDCEMRFDDANDLRKHAKSHSEEKPFTCDICNEIFLSQSNLKKHNMTIHSETSLPSEGIEETVKVKTKIKPFACVLCSKTFGWKSHLKSHIMAIHTGERPYVCTVCDKKFVQQSNLRLHAKVAHDIVKPLNCETCNKVFRNENNLKEHMTIHSEESLENDKNNARVKPYACVLCSKRFGWKSHLKTHIMALHTGERPYACSMCDKKFVQKSYLRFHMKNSHPGERATHLINIGSRPYTCKVCSVKFTNKINFENHKRLHTDTPPFLCIKCDQKFTTKIDLDSHNTSLHSGELPFTCSTCNSRFEDETALNKHKLIHSDAKPLSCDVCDRTFLANSALRRHAVTHSDEKPFACKICKKSFKQDRVLRKHMQIHTEEKQFACDTCDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHTNEKPFSCGLCNKRFRLKSCLRNHQMVHTGERPYPCDRCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361826;
- 90% Identity
- iTF_00361826;
- 80% Identity
- iTF_00361826;