Cpec020991.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596377.1:5227096-5233086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.7e-06 0.00056 20.6 0.3 1 23 178 201 178 201 0.96 2 23 0.00011 0.0063 17.3 1.5 1 23 204 226 204 226 0.98 3 23 1.3e-05 0.00077 20.2 1.5 1 23 252 275 252 275 0.95 4 23 9.7e-08 5.6e-06 26.9 0.6 1 23 281 304 281 304 0.97 5 23 0.00051 0.029 15.2 2.8 1 23 310 332 310 332 0.98 6 23 2.7e-05 0.0015 19.2 0.5 1 23 353 376 353 376 0.94 7 23 2.2e-05 0.0013 19.5 3.0 1 23 382 405 382 405 0.95 8 23 0.00067 0.038 14.8 0.2 3 23 413 433 411 433 0.98 9 23 0.00014 0.0082 17.0 0.6 1 23 439 462 439 462 0.97 10 23 0.0061 0.35 11.8 0.6 1 23 485 508 485 508 0.94 11 23 7e-07 4e-05 24.2 0.3 1 23 514 537 514 537 0.97 12 23 7.6e-06 0.00044 21.0 0.7 2 23 544 565 543 565 0.96 13 23 0.0088 0.51 11.3 0.8 1 23 582 605 582 605 0.94 14 23 0.00016 0.0094 16.8 2.3 1 23 611 634 611 634 0.96 15 23 0.0002 0.011 16.5 2.4 1 23 650 672 650 672 0.98 16 23 0.39 22 6.1 0.8 3 23 680 701 678 701 0.85 17 23 0.0027 0.15 13.0 0.9 1 23 707 729 707 729 0.97 18 23 0.011 0.63 11.0 0.1 2 23 736 757 735 757 0.95 19 23 2.2e-05 0.0013 19.5 1.7 1 23 763 785 763 785 0.97 20 23 1.5e-06 8.6e-05 23.2 0.7 1 23 791 813 791 813 0.97 21 23 0.0001 0.0058 17.4 2.4 1 23 819 842 819 842 0.92 22 23 0.00015 0.0086 16.9 4.2 1 23 848 870 848 870 0.98 23 23 0.00033 0.019 15.8 1.1 1 23 876 899 876 899 0.96
Sequence Information
- Coding Sequence
- ATGTCCGAATCATCTCTATGTAGAGTGTGTCTGACCGATAATATCAGGATGTATGCGCTCAGCAACTCTCGTTATCAAGAGTTATATGAGAAATTAGCAGGCGAAACGTTACTATCAGGTGAGGGTCTGCCTGACTGTCTGTGCATACTCTGCCACTCGCAGGTGCTGAAGTTCTGGAGATTCTTCGAGATGTCGCACAACTCAGAAAAGAACCTCACTAAGATGCTGGAATACGGAGTCAAGTTAAGTCGCTTGTCAGTGGCTCTTCTAGAGCGGGTGAGTGTGcacaacctgtcaataagctctGTCGTACACACGtcagtatttgacattttgaagGAGGAAGCTAAATCGCCTGTCAAGATAGAGGTCTTTTCCGAAGAGAGGAAACTGGATGATCAAATTGAAGatGCTGTATTTGCAGATTTATTAGCTGCTGCTGAGTCGGACGACAATAACTCTGACGTGGATCTACTCGAAGCTGACACTGTCAAAATAGAATCAAACAAAGAAGCTAAACCAATAACTGCATATCCGTGCGAGGATTGCCCGCGTCGATTCGATACAGCAAGAGATTTGAAGCGCCACAGAACCAGTgctcataaaaaatacatatgcaGAAAATGCGACGAAACATTTCTGAACCCAGctcatttaaaaatacatatgaGATATCACAAAAAAGAAAAGTCATATAAAAGTGCCAGCGATGGTATAGATAGAGAGAGTCTTATAATTTCTACAGGAGAGAAGTTCGTTTGTGTTCTCTGCAAGAAGGCGTTCTCTCAGAAAGGTCATTTAAAAACTCATATAATGGCatttcacactggagaaaagccatttgCGTGCGCTGTGTGCGATAAGCGTTTCGTACAAAAAAGCAATCTAAGAACGCACATGAAAACGGCGCACACTTATAAGAAACCGTACACTTGTACCATCTGCAATGGAGTGTGCAATAACGAAAGCCATTTAAAAGAACATATGAGTCTTCACGGTGGAGACAGTTTAGCAATAAACGATAATGATATAAATGAGATCCAAGGAGAGAAACCGTTTGCGTGCGGGCGCTGCGGTAAGACATTTACAGCGAAAGCTCATTTAAAATCCCATATAATGGCCATACACACCGGAGAACGACCGTTTGCATGCACTATGTGTGATAAAAAATACACGCAGAAAAGCCATTTAAGATTGCATGCGAGATTATCACACGTCGTAGAAAAGCCATTCGGGTGTGACGATTGCGAAATGAGATTCGACGATGCCAATGATTTGAGGAAACACGCGAAAAGTCATTCTGAAGAAAAACCATTTACGTGTGACATATGCAATGAGATATTTTTGTCACAGAGCAACTTAAAAAAGCACAATATGACAATTCACAGTGAAACTTCGTTACCAAGTGAAGGTATTGAAGAAACTGTTAAAGTGAAGACAAAGATTAAGCCATTTGCTTGTGTATTGTGTAGCAAAACATTCGGTTGGAAATCTCATTTGAAATCTCATATAATGGCGATCCACACTGGAGAAAGGCCATATGTTTGCACGGTGTGTGACAAGAAATTTGTACAGCAAAGCAATTTAAGACTACACGCTAAAGTCGCACACGATATAGTAAAACCTTTAAACTGCGAGACATGTAATAAAGTATTCCGAAACGAAAACAATTTGAAAGAACATATGACTATCCACAGCGAAGAATCCTTAGAAAACGACAAAAACAACGCTAGAGTAAAGCCATATGCCTGTGTGCTCTGTAGCAAAAGATTTGGCTGGAAATCTCATTTGAAAACTCATATAATGGCGCTCCACACTGGCGAAAGGCCATATGCATGTTCTATGTGCGATAAGAAATTCGTTCAGAAAAGCTATTTAAGGTTCCACATGAAGAACAGTCACCCTGGGGAAAGAGCGACACACTTAATCAACATCGGCAGTCGACCGTATACCTGCAAAGTGTGTTCCGTGAAATTCACAAACAAAATCAACTTTGAAAACCACAAAAGACTTCACACAGACACTCCTCCCTTCCTATGCATAAAATGCGACCAGAAATTCACAACGAAAATCGATTTGGATTCACACAACACGAGTTTACACTCTGGCGAGTTACCATTTACATGCTCAACATGCAATTCCAGGTTTGAAGATGAAACTGCATTGAACAAACATAAGCTTATACACTCTGACGCGAAGCCGTTGTCCTGTGACGTGTGTGATAGAACATTCCTAGCCAATAGCGCTCTGCGACGCCACGCTGTAACACACAGCGACGAAAAACCTTTCGCATGTAAAATATGCAAGAAATCCTTCAAGCAAGACAGGGTCCTCCGTAAACACATGCAAATTCACACAGAGGAAAAGCAATTCGCATGTGACACATGTGATAGAAAGTTCTACCAGAGAGGTAACTTAATAAGTCATATGAGAATTCACTCGGGAGAAAAGCCATTTGTTTGTGATAGGTGCGGGAATAGTTTCAATCAGAAAAGTCATTTGAGAACTCATGTACTGTTTATGCATACGAATGAGAAGCCATTCTCTTGTGGATTGTGCAATAAGCGGTTTAGATTGAAGAGTTGTCTCCGGAACCATCAAATGGTACACACCGGAGAGAGACCTTATCCATGTGATAGGTGcgataaaaagtattataagaAAGGTGAATTGAAATCGCATGTTTTAAAAATGCACTCATAG
- Protein Sequence
- MSESSLCRVCLTDNIRMYALSNSRYQELYEKLAGETLLSGEGLPDCLCILCHSQVLKFWRFFEMSHNSEKNLTKMLEYGVKLSRLSVALLERVSVHNLSISSVVHTSVFDILKEEAKSPVKIEVFSEERKLDDQIEDAVFADLLAAAESDDNNSDVDLLEADTVKIESNKEAKPITAYPCEDCPRRFDTARDLKRHRTSAHKKYICRKCDETFLNPAHLKIHMRYHKKEKSYKSASDGIDRESLIISTGEKFVCVLCKKAFSQKGHLKTHIMAFHTGEKPFACAVCDKRFVQKSNLRTHMKTAHTYKKPYTCTICNGVCNNESHLKEHMSLHGGDSLAINDNDINEIQGEKPFACGRCGKTFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFGCDDCEMRFDDANDLRKHAKSHSEEKPFTCDICNEIFLSQSNLKKHNMTIHSETSLPSEGIEETVKVKTKIKPFACVLCSKTFGWKSHLKSHIMAIHTGERPYVCTVCDKKFVQQSNLRLHAKVAHDIVKPLNCETCNKVFRNENNLKEHMTIHSEESLENDKNNARVKPYACVLCSKRFGWKSHLKTHIMALHTGERPYACSMCDKKFVQKSYLRFHMKNSHPGERATHLINIGSRPYTCKVCSVKFTNKINFENHKRLHTDTPPFLCIKCDQKFTTKIDLDSHNTSLHSGELPFTCSTCNSRFEDETALNKHKLIHSDAKPLSCDVCDRTFLANSALRRHAVTHSDEKPFACKICKKSFKQDRVLRKHMQIHTEEKQFACDTCDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHTNEKPFSCGLCNKRFRLKSCLRNHQMVHTGERPYPCDRCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00362207;
- 90% Identity
- iTF_00362207;
- 80% Identity
- iTF_00362207;