Cpec021101.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596378.1:86453-96226[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-05 0.0073 16.4 0.0 7 35 46 73 42 78 0.88 2 3 1.8 1.1e+03 -0.2 0.0 20 30 177 187 176 188 0.87 3 3 0.027 17 5.7 0.0 7 34 198 224 195 235 0.84
Sequence Information
- Coding Sequence
- ATGGACCACGGGATCCCGCTCAACATCCACGCCAGGCCGCGCATCGTCGGCCGCCGGCCCAACGCCATCGTCAACATAGAGACAGACGTCTTCCAGGAGAAGTCCTACAAGCAGTACTCCTCGCAGCACCTCCGAGACGCGCTGATAGCCGTCAAGAGAGGGTACAGTGTCTACGCAGCCTCGAACAAATACGGAGTTCCTAGGAAGACGTTACGGAATTGGATGGAAAAGTATGATATAAAGAGTCAGTTCTCGAAAGGGCGTCGCGAGTTCGCGATCTCGAACGTGCAGTGTCAGTACGACAGCGGCTCCGACGCGGAGCCTCGCGAGGAGCTGTCGGACGACCACACCTACAACGCGCGCTCCTACGAGCCGCCCGCCTTCTTCATCAGACAATCGAGCCAGCAGCCGCTGCAGGCTCTATCGCACCTGGCGGAGCTGCGGCCCAAGATCATGACGATAGGTCCCGGCTTCCCGTCCGTGAACGTGATCCACGTCAGCGACCAGCCGCCGCCACCCGCGATGCTATCTCAAGCCCAGCCAGAGTACAGCATCAACAAGCGCATCCGCCGCAGCGAGGTGGTGTTGCGGCAGGCTGCCGACTGCGTGAGTCGCGGGCTCACCTTCCAGACAGTGTCGGAACAGTTCAATATACCTATCTCTACTATACGATTCTTCATGGCGAGGAAAGGCATCTTGCCGCGGCGACGGCGCGGTAGGACCACGCAGGCGCCGCCCTCCGTGAGTCCTGAGCCGCCGTACCACATACAGCACTTCAAGCTGCCTCCTATGGTGGGCCTGCGCCCTGACGAGGACGAGTCCAATGAACCCTCCACATAA
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKRGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRREFAISNVQCQYDSGSDAEPREELSDDHTYNARSYEPPAFFIRQSSQQPLQALSHLAELRPKIMTIGPGFPSVNVIHVSDQPPPPAMLSQAQPEYSINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRTTQAPPSVSPEPPYHIQHFKLPPMVGLRPDEDESNEPST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700962; iTF_01528231;
- 90% Identity
- -
- 80% Identity
- -