Xdes024507.1
Basic Information
- Insect
- Xanthorhoe designata
- Gene Symbol
- -
- Assembly
- GCA_963582015.1
- Location
- OY757059.1:4692669-4699025[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.1e-06 0.0065 16.7 0.0 7 35 46 73 42 78 0.88 2 3 2.8 2.3e+03 -1.0 0.0 21 30 184 193 181 194 0.83 3 3 0.024 19 5.6 0.0 7 34 204 230 201 241 0.84
Sequence Information
- Coding Sequence
- ATGGACCACGGTATACCCTTGAATATCCACGCACGACCGCGCATCGTCGGCCGCCGACCAAACGCAATAGTCAACATAGAAACCGACGTCTTTCAGGAGAAATCTTACAAGCAGTACTCGTCCCAACATCTTAGGGATGCTTTGATAGCCGTGAAGAAAGGATACAGCGTGTACGCAGCGTCGAATAAGTATGGAGTGCCGAGGAAGACCCTGAGGAATTGGATGGAGAAATACGATATAAAAAGTCAGTTCTCGAAGGGACGTCACTTCGCGATATCAAACGTGCAGTGCCAATACGAGAGCGGGTCCGAGGCGGAGCCCGAGCCGCGTGAGGAGCTCTCCGACGACCACACGTACGGCGCTAGGAGCTATGAGCCACCAGCGTTCGTTATACgacagTCAAATCAAATGCAGCCTCTCCAGTCCCTCTCCAACTTCTCCGATCTGCGGCCGAAGATAATGACGCTCGCGCCCGGCTTCCCCACCGTCAACGTCATCCACGTCGGAGACCAGCCGCCTTCCACCAACTTGCAAATGCACACGATGCTCCAAGCCCAGCCCGAGTATAACATCAACAAGCGCATCCGTCGCAGCGAGGTGGTGCTGCGGCAGGCAGCCGACTGCGTGAGTCGCGGGCTCACCTTCCAGACTGTGTCCGAGCAGTTCAACATACCTATATCCACTATACGTTTTTTCATGGCGAGAAAAGGGATTTTACCGAGACGAAGACGCGGCCGAAGCATGGCACCACCCGCAGAAAGTCCGGAGCCGCCATACCACATCCAACATTTAAAACTACCCGCCATCGCCGGCATGCGTCCCGAAGACGAGGGCAATGACCCCGCCACATAG
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRHFAISNVQCQYESGSEAEPEPREELSDDHTYGARSYEPPAFVIRQSNQMQPLQSLSNFSDLRPKIMTLAPGFPTVNVIHVGDQPPSTNLQMHTMLQAQPEYNINKRIRRSEVVLRQAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRSMAPPAESPEPPYHIQHLKLPAIAGMRPEDEGNDPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361566;
- 90% Identity
- -
- 80% Identity
- -