Ccro001974.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_905220415.1
- Location
- HG991962.1:1461181-1470204[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-58 1.9e-54 185.4 8.6 54 297 30 267 3 269 0.83 2 2 2 2.4e+04 -8.0 16.1 1 51 266 318 266 340 0.59
Sequence Information
- Coding Sequence
- ATGATGGAATCGGAAGGTGGCCATAGGAACTCAAAAAAAAAATCTAAAAATTTCGAATACATTTCAGAGACTGTGGGTCGTCGTGGTGGAACCAGGTTAGCTGCATTGAGCCCGGGCGGTCTGCACTCGCCCAGACGGAGTTCAGAGGATTCTGATGAAGTGCTCAGTATTAAGGATTTGAGGCACGAATTAAAAGAAGTGGAAGAGAAGTTCCGCAAAGCGATGATATTGAATGCCCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGTTGGAGCTGCTCAAGGATAGGATAGAGGAATTACAGGAAGAATACGCTCAACTACAGCGTGAACACAAAGAGAAGTGCTCCTCACACGAGCGGCTGAAGCGCGAGCACGCGGCACTTGAACGTGAACTGGGCGCGGCCCGTGACGCGGTGCGAGCACGTGACGCGGCCGCTGCTGACGCGGGCTACGCGTTTGTGGACGCGGGGGACACTGCGGCACCGAGTGGGGGGAGCGGGGGAAATGGGGTGGGAGGGGGGATGCCGGCGCTAGCTCTCGTGTCGCACCAGTCGCAGGCTCTGCTGGAGGACGGCGGGGAGGGGACGCTCGACGTCCGGTTGCAGAATCTGGTTAATTCGAAGCAAGCACTAGAATCAGAAGTGCGTAAACTCAAACTACAACTGAATGAGGAAAGAGCGGCTCGACAGAATGGAGTCTCATCACATCACGACCAGGACTATGAGAATGAAGTGGAGGCGCTGCGCAAGTGCGTGTCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGGCGGCGGGCGCGGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCCACGCACGACGCGCAGGACGAGCGCGAGCAGGAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGCTAGAGAAGCTCTAAATCGCGTGGAAGAACTGGAGACAGAGAACAGTCACCTCACGAAGCGGCTCGACAAACTGAAGAACGCAAAGTCGGCGCTACTCAAAGAACTGTGA
- Protein Sequence
- MMESEGGHRNSKKKSKNFEYISETVGRRGGTRLAALSPGGLHSPRRSSEDSDEVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHAALERELGAARDAVRARDAAAADAGYAFVDAGDTAAPSGGSGGNGVGGGMPALALVSHQSQALLEDGGEGTLDVRLQNLVNSKQALESEVRKLKLQLNEERAARQNGVSSHHDQDYENEVEALRKCVSEAKGRAARAEAEAALAAGAVARLEAQLQRLRATHDAQDEREQELKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710225;
- 90% Identity
- -
- 80% Identity
- -