Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000025.1:4412978-4414973[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.049 4.8 8.8 2.8 1 23 61 83 61 83 0.98

2 16 0.00015 0.014 16.7 1.3 1 23 87 109 87 109 0.98

3 16 0.014 1.4 10.5 0.4 1 23 149 172 149 172 0.92

4 16 0.00023 0.022 16.1 1.5 1 23 178 200 178 200 0.98

5 16 2.3 2.2e+02 3.5 0.6 5 23 202 220 201 220 0.92

6 16 0.00017 0.016 16.5 1.3 1 23 226 249 226 249 0.96

7 16 8.8 8.5e+02 1.7 6.9 1 23 311 334 311 334 0.90

8 16 1.5 1.4e+02 4.1 0.1 2 23 361 383 360 383 0.92

9 16 0.00049 0.047 15.1 0.4 2 23 406 427 405 427 0.97

10 16 0.0073 0.7 11.4 1.3 1 23 431 453 431 453 0.98

11 16 0.66 64 5.2 0.7 1 23 458 481 458 481 0.88

12 16 0.59 56 5.4 1.4 2 23 497 519 496 519 0.88

13 16 0.00071 0.068 14.6 1.0 2 23 527 549 526 549 0.96

14 16 0.0071 0.68 11.4 0.2 3 23 557 577 556 577 0.99

15 16 0.00021 0.02 16.3 2.3 1 23 583 605 583 605 0.99

16 16 0.00011 0.011 17.1 0.4 1 23 611 634 611 634 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.049	4.8	8.8	2.8	1	23	61	83	61	83	0.98
2	16	0.00015	0.014	16.7	1.3	1	23	87	109	87	109	0.98
3	16	0.014	1.4	10.5	0.4	1	23	149	172	149	172	0.92
4	16	0.00023	0.022	16.1	1.5	1	23	178	200	178	200	0.98
5	16	2.3	2.2e+02	3.5	0.6	5	23	202	220	201	220	0.92
6	16	0.00017	0.016	16.5	1.3	1	23	226	249	226	249	0.96
7	16	8.8	8.5e+02	1.7	6.9	1	23	311	334	311	334	0.90
8	16	1.5	1.4e+02	4.1	0.1	2	23	361	383	360	383	0.92
9	16	0.00049	0.047	15.1	0.4	2	23	406	427	405	427	0.97
10	16	0.0073	0.7	11.4	1.3	1	23	431	453	431	453	0.98
11	16	0.66	64	5.2	0.7	1	23	458	481	458	481	0.88
12	16	0.59	56	5.4	1.4	2	23	497	519	496	519	0.88
13	16	0.00071	0.068	14.6	1.0	2	23	527	549	526	549	0.96
14	16	0.0071	0.68	11.4	0.2	3	23	557	577	556	577	0.99
15	16	0.00021	0.02	16.3	2.3	1	23	583	605	583	605	0.99
16	16	0.00011	0.011	17.1	0.4	1	23	611	634	611	634	0.96

Sequence Information

Coding Sequence: ATGAAAGTGCTGAGCCCTTACACTGTTAAATTAGATATCACAGATCTAAAATTCACTATTTGTAATTCAAAGACACCAACGCTGCAAGACCTGTTAGATCATTTACAAAATAGTCACGATAAAGTTATATACGAGGACATTGAAAACCAATTGGTGTCCTACAAATTTGATGACGATAAGTTTAGATGTGTGTTTTGCAAAGAGGAGTTTCGTAGATTCCCAACGTTGCAGTTTCATATGAATAAGCATTATCGGAATTATGAATGTGATGTGTGCCACGCTGGTTTCATGAACAACAATAATTTAAGATGGCACAAAAAGTCGCATAAAGGGCAAAACTTAGGTAAAAAGATTGGTAAAAGTAAAGACATGGAGAATGAAGATGATTGTGCCGAAATTGAAGGAATAGAAGATCGAAATGAAACGTTAACGGAAAATAATCTCCATATATGTAGTGAATGCGATACGTATTACGAAAATGAAGAGTTGCTCCGAAATCACGCGCTAAATGAACACTCGCCTAAAAGGGACTATAACTGCGAAGATTGTGATATGAAATTTTTAACAGCAGATGAACTAAAACATCATCAGCAAAGTCATAGTGAATGTCTCAGTTCGTTTAAAGATGATAAAACTTTACATGATCATTTGATTACCCATGCCAATGGCATTGGATTTAAATGCACAGAATGTGATTTGTCATTTGTACATGAAAAAGAGATGCAAGAACATATACAAGAGAAGCATGgtacCCCGGAAACTGACAAAAAAGTCGATagcaaaaagaaaaaaattaagaaagttAAATCTAGTGATGTTGCCGGTAAGAAAATGGGGCGGTctgcattaaaaattaaatttcgtGAAAATGTACTTGAAGTATTGTATAATTCTAATGCATCGGCTATCAGAAGTTGTGTTGACTACAGATACACATGTTGTTTTTGCTCTGACTGTTACGAGCGTCCGGAGGATTTGAAAAATCACAACTTGGAGTGTCACGATAAGTCCACCTTAAGGAATGGAATTAGGGCAAAACAAATGAACTCATTAACTCTGAAACTGGATATTACTGGACTACGATGTACCCTCTGTGATACCGAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGATATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACATTTTACGTTGCACATTTTGTCGACGGGAATTTGTCCAATTAAGACTACTAATGGCACACATAAATGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGGTTTATAAGTAAGAATATTTATCGATCTCACCTCAGGAGCCATGAAATTGGCAATTTCAAATGCGACTACTGTGAAAGGGTTATGGATACTAGAGCCAAAAAATTGAACCACGAGAGGGCGACACATGGACGATTGAAGAATTTCGATGGCACAGCGTCGAAGTATGTGAATAAGTGCCAGTATTGCTATCAAACGTTCAACGGATATACTAAGAAGCAAAAGCATTTAGTGGAAGTCCACGGGGTGAAACTTCCCGGCTTGCAGTGCAAGGCTTGCGATCGCACGTTCCCAACTCAGCGCAGATACACGATTCATATAAAGAGGGATCATCTAATGGAACGGAGACACGGTTGTACAGTGTGCGACATGAAATTTTTCACGGGCCCCGGCTTGAAGAATCATATGATCAGCCATTCTGGTGTGAAGAAGTATCAATGTGATATTTGTATGAAGTCATATGGCATGAAAAGTACACTGCGTCATCATTTACGTATCCATGCGGATGATAGGAAGTACGTGTGTGGGCAGTGTGGAAAAGCCTTTATACAGAAGTGTAGTTGGGCTGGCCATATGCGAGCTAAACATTCGGAACTAGTGTGA
Protein Sequence: MKVLSPYTVKLDITDLKFTICNSKTPTLQDLLDHLQNSHDKVIYEDIENQLVSYKFDDDKFRCVFCKEEFRRFPTLQFHMNKHYRNYECDVCHAGFMNNNNLRWHKKSHKGQNLGKKIGKSKDMENEDDCAEIEGIEDRNETLTENNLHICSECDTYYENEELLRNHALNEHSPKRDYNCEDCDMKFLTADELKHHQQSHSECLSSFKDDKTLHDHLITHANGIGFKCTECDLSFVHEKEMQEHIQEKHGTPETDKKVDSKKKKIKKVKSSDVAGKKMGRSALKIKFRENVLEVLYNSNASAIRSCVDYRYTCCFCSDCYERPEDLKNHNLECHDKSTLRNGIRAKQMNSLTLKLDITGLRCTLCDTEMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDILRCTFCRREFVQLRLLMAHINVHYRNFVCEVCDHGFISKNIYRSHLRSHEIGNFKCDYCERVMDTRAKKLNHERATHGRLKNFDGTASKYVNKCQYCYQTFNGYTKKQKHLVEVHGVKLPGLQCKACDRTFPTQRRYTIHIKRDHLMERRHGCTVCDMKFFTGPGLKNHMISHSGVKKYQCDICMKSYGMKSTLRHHLRIHADDRKYVCGQCGKAFIQKCSWAGHMRAKHSELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357889; iTF_00357894;
90% Identity: iTF_00357894;
80% Identity: -