Cbeh026474.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000025.1:5440896-5443206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.052 5 8.7 0.2 1 23 76 99 76 99 0.92 2 17 0.15 14 7.3 0.3 2 23 123 145 122 145 0.95 3 17 0.059 5.7 8.5 2.8 1 23 167 189 167 189 0.98 4 17 4.3e-05 0.0042 18.4 1.6 1 23 193 215 193 215 0.98 5 17 0.011 1 10.9 0.2 1 23 255 278 255 278 0.92 6 17 0.00011 0.011 17.1 1.2 1 23 284 306 284 306 0.98 7 17 4.4 4.2e+02 2.6 0.7 5 23 308 326 307 326 0.91 8 17 0.0002 0.019 16.3 1.3 1 23 332 355 332 355 0.96 9 17 1.8 1.7e+02 3.9 0.1 2 23 467 489 466 489 0.92 10 17 0.0021 0.2 13.1 0.7 2 23 512 533 511 533 0.97 11 17 4.9e-05 0.0047 18.2 1.6 1 23 537 559 537 559 0.98 12 17 0.37 35 6.0 0.8 1 23 564 587 564 587 0.94 13 17 0.33 31 6.2 2.9 2 23 603 625 602 625 0.88 14 17 0.0001 0.0098 17.2 0.9 2 23 631 653 631 653 0.97 15 17 0.0051 0.49 11.9 2.1 3 23 661 681 660 681 0.99 16 17 1.2e-05 0.0012 20.1 1.6 1 23 687 709 687 709 0.99 17 17 8.6e-05 0.0082 17.5 0.7 1 23 716 739 716 739 0.97
Sequence Information
- Coding Sequence
- atgtttttagtgggttatttcctAGTCAAAGCAACTACAACTTGGAACATTTTGTTTATAGGTCCTCGGCAACACCAGAGAGATAACTTGAAAATGAGTCAAGTTGAAATCAATCGAATAGAAAGAGCAAAACAACTTGACTTTAGAGAAAAGCACCAATCTAATGTTCGAAATGTTTTGATGTATTCGAACGCCACGATGTTTAAAAGCTATGATGATAAAGGATACAAATGCGGTTTCTGCCCGGACCAATACACCACACCAGCTGATTTAAAAGAACACTCCTTAAATTCACATACAGGAAATTGTCTTGTAGATATCAAAGTGCTACGCCCTTACACTGTTAAATTAGATATCACAGATCTAAAATGCACTATTTGTAATTCAAATACACCAACGCTGCAAGACCTGCTAGATCATTTACAAAATAGTCACGATAAAGTTATATACGAGGATATTGAAAACCATTTGGTATCCTATAAATTTGATGACGATAAGTTTAGATGTGTGTTTTGCAAAGAGGAGTTTCGTAGATTCCCAACGTTGCAGTTTCATATGAATAAGCATTATCGGAATTATGAATGTGATGTGTGCCACGCTGGTTTTATGAACAGCAGTAATTTaagagtgcacaaaaaaaaacataaaaggcAAAACTTACGTAAAAAGATTGGTAAAAGTAAAGACATGGAGAATGAAGATGATTGTGCTGAAATTGAAGAAATAGAAGATCGAAATGAAACCTTAACGGAAAATAATCTCCATATATGTAGTGAATGCGATGCGTATTTCGAAAATGAAGAGTTGCTCCAAAATCACGCGCTAAATGAACACTCGCTTAAAAGGGACTATAACTGCGAAGATTGTGATATGACATTTTTAACAGCAGATGAACTAAAACATCATCAGCAAAGTCATAGAGAATGTCTCAGTTCGTTTAAAGATGATAAAACTTTACATGATCATTTGATGATCCATGCCAATGGCATTGGATTTAAATGCACAGAATGTGATTTGTCATTTGTACATGAAAAAGAGATGCAAGAACATATACAAGAGAAGCATGgtacCCCGGAAACTGACAAAAAAGTCGATagcaaaaagaaaaaaattaagaaagttAAATCTAGTGATGTTGCCGGTAAGAAAATGGGGCGGTctgcattaaaaattaaatttcgtGAAAATGTACTTGAAGTATTGTATAATTCTAATGCATCGACTATCAGAAATTGTGTTGACTACAGATACAAATGTTGTTTTTGCTCCGACTGTTATGAACGTCCGGAGGATTTGAAAAATCACAACTTGCAGTGTCATGATAAGTCCACCTTGAGGAATGGAATGATGGCAACACACATGAACTCATTATCTCTGAAACTGGATATAACTGGACTACGATGTACCCTCTGTGATACGGAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGATATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACGTCTTACGTTGCACATTTTGTCGACAGGAATTTGTCCAATTCAGACTACTAATGGCACACATAAAAGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGGTTTataagtaagaataattatcaATCTCACCGCAGGATCCATGAAATTGGCAATTTCAAATGCGACTACTGTGAAAGGGTTATGGATACTAGAGCAAAAAAATTGAACCACGAGAGGGTGACACATGGACGATTGAAGAATTTCGATGGCATAGCGTCGAAGTATGTGAATAAGTGCCAGTATTGCCATCAAACGTTTAACGGATATACTAAGAAGCAAAAGCATTTAGTGGAAGTCCACGGGATGAAACTGCCGCAGTGCAAGGCTTGCGATCGCACGTTCCCAAATCGGTCCACATACACGATTCATATAAAGAGGGATCATCTAATGGAACGGACACACGGTTGTAATGTGTGCGACATGAAATTTTTCACGTTCTGCGACTTGAAGGATCACATGATCAGCCATTCTGGTGTGAAGAAGTATCAATGTGATATTTGTATGAAATCATTTGGCAGGAAAAAAACACTGCGTCAACATTTACGTATCCATGCGGATGATAGGAAACTGTATGTTTGTGGGCAGTGTGGAAAAGGCTTTATAAAGAAGTGTAGTTTGGCTGGCCATATGCGAGCTAAACATTCGGAGCTAGTATGA
- Protein Sequence
- MFLVGYFLVKATTTWNILFIGPRQHQRDNLKMSQVEINRIERAKQLDFREKHQSNVRNVLMYSNATMFKSYDDKGYKCGFCPDQYTTPADLKEHSLNSHTGNCLVDIKVLRPYTVKLDITDLKCTICNSNTPTLQDLLDHLQNSHDKVIYEDIENHLVSYKFDDDKFRCVFCKEEFRRFPTLQFHMNKHYRNYECDVCHAGFMNSSNLRVHKKKHKRQNLRKKIGKSKDMENEDDCAEIEEIEDRNETLTENNLHICSECDAYFENEELLQNHALNEHSLKRDYNCEDCDMTFLTADELKHHQQSHRECLSSFKDDKTLHDHLMIHANGIGFKCTECDLSFVHEKEMQEHIQEKHGTPETDKKVDSKKKKIKKVKSSDVAGKKMGRSALKIKFRENVLEVLYNSNASTIRNCVDYRYKCCFCSDCYERPEDLKNHNLQCHDKSTLRNGMMATHMNSLSLKLDITGLRCTLCDTEMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDVLRCTFCRQEFVQFRLLMAHIKVHYRNFVCEVCDHGFISKNNYQSHRRIHEIGNFKCDYCERVMDTRAKKLNHERVTHGRLKNFDGIASKYVNKCQYCHQTFNGYTKKQKHLVEVHGMKLPQCKACDRTFPNRSTYTIHIKRDHLMERTHGCNVCDMKFFTFCDLKDHMISHSGVKKYQCDICMKSFGRKKTLRQHLRIHADDRKLYVCGQCGKGFIKKCSLAGHMRAKHSELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357942;
- 90% Identity
- iTF_00358889;
- 80% Identity
- -