Cbeh026272.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000025.1:4424957-4427186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.16 16 7.1 0.5 1 23 40 63 40 63 0.92 2 17 1.2 1.1e+02 4.5 0.2 2 23 87 109 86 109 0.93 3 17 0.064 6.1 8.4 2.6 1 23 131 153 131 153 0.98 4 17 7.7e-05 0.0074 17.6 1.4 1 23 157 179 157 179 0.99 5 17 0.01 0.98 10.9 0.2 1 23 219 242 219 242 0.92 6 17 0.00011 0.01 17.1 1.2 1 23 248 270 248 270 0.98 7 17 1.8 1.7e+02 3.9 4.1 1 23 276 298 276 298 0.97 8 17 6.2e-05 0.0059 17.9 0.7 1 23 304 327 304 327 0.96 9 17 1.7 1.6e+02 3.9 0.1 2 23 439 461 438 461 0.92 10 17 0.00057 0.054 14.9 0.4 2 23 484 505 483 505 0.97 11 17 0.013 1.3 10.6 1.3 1 23 509 531 509 531 0.98 12 17 0.35 34 6.1 0.8 1 23 536 559 536 559 0.94 13 17 0.18 17 7.0 3.9 2 23 575 597 574 597 0.95 14 17 0.0016 0.15 13.5 0.9 2 23 605 627 604 627 0.96 15 17 0.00034 0.033 15.6 0.3 3 23 635 655 634 655 0.99 16 17 1.8e-05 0.0018 19.6 0.8 1 23 661 683 661 683 0.99 17 17 0.00013 0.012 16.9 0.4 1 23 689 712 689 712 0.96
Sequence Information
- Coding Sequence
- ATGAATCGAACAGAAAGAGCAAAACAACTTGACTTTAGAGAAAAGCACCAATCTAATGTTCGAAATGTTTTGATGTATTCGAACGCCACGATGATTAGAAGCTGTGATGATAACGGATACAAATGCGGTTTCTGCCGGGACCAATACACCACACCAGCTGATTTGAAAGAACACTCCTTAAATTCACATACAAGAAATTGTCTTGTAGATATGAAAGTGCGGAGCCCTTACACTGTTAAATTAGATATCACAGATCTAAAATGCACTATTTGTAATTCAAATACACCAATGCTGCAAGACCTGCTAGATCATTTACAAAATAGTCACGATAAAGATATATACGAGGATATTGAAAACCAATTGGTGTCCTATAAATTTGATGACGATAAGTTTAGATGTGTGTTTTGCAAAGAGGAGTTTCGTACATTCCCAACGTTGCAGTTTCATATGAATAAGCATTATCGGAATTATGAATGTGATGTGTGCCACGCTGGTTTCATGAACAACAATAATTTAAGATGGCACAAAAAAACGCATAAAAGGCAAAACCTAGGTAAAAAGATTGGTAAAAGTAAAGACATGGAGAATGAAGATGATTGTGCTGAAATTGAAGAAATAGAAGATAGAAATGAAACGTTAACGGAAAATAATCTCCATATATGTAGTGAATGCGATGCGTATTTCGAAAATGAAGAGTTGCTCCGAAATCACGCTCTAAATGAACACTCGCTTAAAAGGGACTATAATTGCGAAGATTGTGATATGACATTTTTAACAGCAGATGAACTAAAACATCATCAGCAAAGTCATAGAGAATTTAAACAGCATCAATGCTACTTATGTCTCAGTTCGTTTAAAGATGATAAAACTTTACATGATCATTTGACGATCCATGCCAATGGCATTGGATTTAAATGCCCAGAATGTGATTTGTCATTTGTACATGAAAAAGAGATGCAAGAACATATACAAGAGAAGCATGgtacCCCGGAAACTGACAAAAAAGTCGATagcaaaaagaaaaaaattaagaaagttAAATCTAGTGATGTTGCCGGTAAGAAAATGGGACGGTCTGCATTACAAATTAAATTTCGTGAAAATGTACTTGAAGTATTATATAATTCTAATGCATCGGCTATCAGAAGTTGTGTTGACTACAGATACACATGTTGTTTTTGCTCCGACTGTTACGAACGTCCGGAGGATTTGAAAAATCACAACTTGGAGTGTCACGATAAGTCCACCTTAAGGAATGGAATGAAGGCAAAACACATGAACACATTAACTCTGAAACTGGATATAACTGGTCTACGATGTACCCTCTGTGATACGGAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGATATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACATTTTACGTTGCACATTTTGTCGACGGGAATTTGTCCAATTAAGACTACTAATGGCACACATAAATGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGGTTTATAAGTAAGAATATTTATCGATCTCACCGCAGGATCCATGAAATTGGCAATTTCAAATGCGACTACTGTGAAAGGGTTATGGATACTAGAGCCAAAAAATTGAACCACGAGAGGGTGACACATGGGCGATTGAAGAATTTCGATGGCACAGCGTCGAAATATGTGAATAAGTGCCAGTATTGCCATCAAACGTTCAACGGATATACTAAGAAGCAAAAGCATTTAGCGAAAGTCCACGGGGTAAAAGTGCCCGGCTTGCAGTGCAAGGCTTGCGATCGCACGTTCCCAAATCGGCAAAGATACACGATTCATATAAAGAGGGATCATCTAATGGAACGGAGACACGGTTGTACAGTGTGCGACATGAAATTTTTCACGTCCCCCAGCTTGAAGATTCACATGATCAGCCATTCTGGTGTGAAGAAGTATCAATGTGATATTTGTATGAAGTCATATGGTAGGAAAAGTACACTGCGTGAACATTTACGTATCCATGTGGATGATAGGAAGTACGTGTGTGGGCAGTGTGGAAAAGCCTTTATACAGAAGTGTAGTTGGGCTGGCCATATGCGAGCTAAACATTCGGAACTAGTATGA
- Protein Sequence
- MNRTERAKQLDFREKHQSNVRNVLMYSNATMIRSCDDNGYKCGFCRDQYTTPADLKEHSLNSHTRNCLVDMKVRSPYTVKLDITDLKCTICNSNTPMLQDLLDHLQNSHDKDIYEDIENQLVSYKFDDDKFRCVFCKEEFRTFPTLQFHMNKHYRNYECDVCHAGFMNNNNLRWHKKTHKRQNLGKKIGKSKDMENEDDCAEIEEIEDRNETLTENNLHICSECDAYFENEELLRNHALNEHSLKRDYNCEDCDMTFLTADELKHHQQSHREFKQHQCYLCLSSFKDDKTLHDHLTIHANGIGFKCPECDLSFVHEKEMQEHIQEKHGTPETDKKVDSKKKKIKKVKSSDVAGKKMGRSALQIKFRENVLEVLYNSNASAIRSCVDYRYTCCFCSDCYERPEDLKNHNLECHDKSTLRNGMKAKHMNTLTLKLDITGLRCTLCDTEMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDILRCTFCRREFVQLRLLMAHINVHYRNFVCEVCDHGFISKNIYRSHRRIHEIGNFKCDYCERVMDTRAKKLNHERVTHGRLKNFDGTASKYVNKCQYCHQTFNGYTKKQKHLAKVHGVKVPGLQCKACDRTFPNRQRYTIHIKRDHLMERRHGCTVCDMKFFTSPSLKIHMISHSGVKKYQCDICMKSYGRKSTLREHLRIHVDDRKYVCGQCGKAFIQKCSWAGHMRAKHSELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357942;
- 90% Identity
- iTF_00357942;
- 80% Identity
- -