Ccro021936.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
-
Assembly
GCA_905220415.1
Location
HG991981.1:4168942-4171162[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.038 3 8.9 0.8 1 23 45 68 45 68 0.93
2 18 0.66 52 5.0 0.4 2 23 92 114 91 114 0.94
3 18 0.047 3.7 8.6 2.8 1 23 136 158 136 158 0.98
4 18 7e-05 0.0055 17.5 1.5 1 23 162 184 162 184 0.99
5 18 0.0071 0.56 11.2 0.2 1 23 224 247 224 247 0.92
6 18 0.00015 0.012 16.4 2.7 1 23 253 275 253 275 0.98
7 18 3.5 2.7e+02 2.7 0.7 5 23 277 295 276 295 0.91
8 18 0.00056 0.044 14.6 1.3 1 23 301 324 301 324 0.96
9 18 8.8 6.9e+02 1.4 7.9 1 23 386 409 386 409 0.91
10 18 1.4 1.1e+02 4.0 0.1 2 23 436 458 435 458 0.92
11 18 0.0024 0.19 12.6 0.9 2 23 481 502 480 502 0.97
12 18 0.0088 0.69 10.9 0.9 1 23 506 528 506 528 0.98
13 18 0.66 52 5.0 0.9 1 23 533 556 533 556 0.88
14 18 0.041 3.2 8.8 3.7 1 23 571 594 571 594 0.92
15 18 0.0016 0.13 13.2 2.3 2 23 602 624 601 624 0.96
16 18 0.00043 0.034 15.0 0.5 3 23 632 652 631 652 0.99
17 18 5.7e-05 0.0045 17.8 1.1 1 23 658 680 658 680 0.99
18 18 0.00012 0.0097 16.7 0.4 1 23 686 709 686 709 0.97

Sequence Information

Coding Sequence
ATGAGTCAAGTTGAAATGAATCGAATAGAAAGAGCAAAACAACTTGACTTTAGAGAAAAGCACCAATCTAATGTTCGAAATGTTTTGATGTATTCGAACGCCACTATCTTTAGAAGCTATGATGATAAAGGATACAAATGCGGTTTCTGCCCGGACCACTACACCACACCAGCTGATTTGAAAGAACACTCCTTAAATTCACATACAGGAAATTGTCTTGTAGATGTTAAAGTGCTGCGCCCTTACACTGTTAAATTAGATATCACAGATCTAAAATGCACTATTTGTTATTCAAATACACCGACGCTGCAAGACCTGCTAGATCACTTACAAAATAGACACGATAACGTTATATACGAGGATATTGAAAACCATTTGGTGTCCTATAAATTTGATGACGATAAGTTTAGATGTGTGTTTTGCAAAGAGGAGTTTCGTAGATTCCCAACGTTGCAGTTTCATATGAATAAGCATTATCGGAATTATGAATGTGATGTGTGCCACGCTGGTTTCATGAATAGCAATAATTTAAGAGTGCACAAAAGAAAACATAAAAGGCAAAACTTACGTAAAAAGATTGGTAAAAGTAAAGACATGGAGAATGAAGATGATTGTGCTGAAATTGAAGAAATAGAAGATCGAAATGAAACCTTAACGGAAAATAATCTCCATATATGTACTGAATGCGATGCGTATTTCGAAAATGAAGAGTTGCTCCAAAATCACGCGCTAAATGAACACTCGCTTAAAATGGACTATAACTGCAAATATTGTGATATGACATTTTTAACAGCAGATGAACTAAAACATCATCAGCAAAGTCATAGAGAATGTCTCAGTTCGTTTAAAGATGATAAAACTTTACATGATCATTTGATGATCCATGCCAATGGCATTGGTTTTAAATGCACAGAATGTGAGTTGTCATTTGTACATGAAAAAGAGATGCAAGAACATATACAAGAGAAGCATGGTACCCCGGAAACTGACAAAGAAGTCGATAGCAAAAAGAAAAAAATTAAGAAAATTAAATCTAGTGATGTTGCCGGTAAGAAAATGGGGCGGTCTGCATTAAAAATTAAATTTCGTGAAAATGTACTTGAAGTATTGTATAATTCTAATGCATCGACTATCAGAAATTGTGTTGACTACAGATACAAATGTTGTTTTTGCTCCGACTGTTATGAACGTCCGGAGGATTTGAAAAATCACAACTTGCAGTGTCATGATAAGTCCACCTTGAGGAATGGAATGATGGCAACACACATGAACTCATTATCTCTGAAACTGGATATAACTGGACTACGATGTACTCTCTGTGATACGGAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGACATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACGTTTTACGTTGCACATTTTGTCGAGAGGAATTTGTCCAATTCAGACTGCTAATGACACACATAAAAGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGGTTTATAAGTCCGACTATTTATCGATCTCACCGCAGGAGCCATGAAATTGGCAATTACAAATGCGACTACTGTGAAAGGGTTATGGATACTAGAGCCAAAAAATTGTACCACGAGAGGGTGACACATAGACGATTGAAGAATTTCGAAGGCCCAGCGTCGAAATATGGGTATAAATGCCAGTATTGCCATCAAACGTTCAACGGATATAATAAGAAGCAAAAGCATTTAGCGGAAGTCCACGGGGTGAAACTGCCCGGCTTGCAGTGCAAGGCTTGCGATCGCACGTTCCCAAATCGGCACAGATACACGATTCATATAAAGAGGGATCATCTAATGGAACGGAGACACGGATGTAAAGTGTGCGACATGAAATTTTTCACGTCCTTCGCCTTGAAGCAGCACATTATCAGCCATTCTGATGTGAAGAAGTATCAATGTGATATTTGTATGAAGTCATATGGCAGGAAAAAAACACTGCGTGAACATTTACGTATCCATGCGGATGATAGGAAGTACGTGTGTGGGCAGTGTGGACAAGGCTTTATACAGAAGTGTAGTTTGGCTGGCCATATGCGAGCTAAACATTCGGAGCTAGTATGA
Protein Sequence
MSQVEMNRIERAKQLDFREKHQSNVRNVLMYSNATIFRSYDDKGYKCGFCPDHYTTPADLKEHSLNSHTGNCLVDVKVLRPYTVKLDITDLKCTICYSNTPTLQDLLDHLQNRHDNVIYEDIENHLVSYKFDDDKFRCVFCKEEFRRFPTLQFHMNKHYRNYECDVCHAGFMNSNNLRVHKRKHKRQNLRKKIGKSKDMENEDDCAEIEEIEDRNETLTENNLHICTECDAYFENEELLQNHALNEHSLKMDYNCKYCDMTFLTADELKHHQQSHRECLSSFKDDKTLHDHLMIHANGIGFKCTECELSFVHEKEMQEHIQEKHGTPETDKEVDSKKKKIKKIKSSDVAGKKMGRSALKIKFRENVLEVLYNSNASTIRNCVDYRYKCCFCSDCYERPEDLKNHNLQCHDKSTLRNGMMATHMNSLSLKLDITGLRCTLCDTEMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDVLRCTFCREEFVQFRLLMTHIKVHYRNFVCEVCDHGFISPTIYRSHRRSHEIGNYKCDYCERVMDTRAKKLYHERVTHRRLKNFEGPASKYGYKCQYCHQTFNGYNKKQKHLAEVHGVKLPGLQCKACDRTFPNRHRYTIHIKRDHLMERRHGCKVCDMKFFTSFALKQHIISHSDVKKYQCDICMKSYGRKKTLREHLRIHADDRKYVCGQCGQGFIQKCSLAGHMRAKHSELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00358935;
90% Identity
iTF_00357889;
80% Identity
-