Cgly003644.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963855885.1
- Location
- OY979628.1:17172458-17184689[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-75 1.6e-70 238.4 23.4 1 269 115 377 115 395 0.89 2 2 1 2.8e+04 -7.7 17.3 1 48 396 442 396 470 0.70
Sequence Information
- Coding Sequence
- ATGGCAAAAAGATCGGAGTTCGCAACACCGGAAAACAGCGATGAGGAAAGCGGCGGTGCGTTTACAGATGGTGATTTTGATGGTATTGACGATGAGGCTATAGTTGAGCCTGATGAATATGTTAACGAAACTGTGAATACGAACATTACGGACCCTAACAGTAGTGTTAGAAGTGTAGAAGAACAAGTCGACGGCCTCGCGATGAAGATAAACGTTAATGGTGCAAATTACGAAGATCTTAACAACCAAAGTGCCAGCGAAGAATCCGGAGATTTCTCCAGAGATTCTCAGAGCGAGGGAAATACTTCTATCGTTGGAATACTGGGCGGTCAACAGAATCACGCGGAGCAGCGgctggcggcgcggcgcgcggcgcgggcggaaGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAAGACCATGCCGACAAGGCGTACGACATGTATGCAGAGACAGTGGGCCgtcgcggcggcgggcggctcgCGGCCCTGAGCCCCAGCGTCATGCATTCGCCGCGGAGAAGTTCCGAAGACTCGGACGACGTGCTCAGCATCAAAGACCTCAGGCATGAGCTGAAAGAAGTGGAGGAGAAGTTCCGGAAGGCGATGATCCTCAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGCTGCAGGAAGAGTACGCGCAGTTGCAGCGCGAGCACCGCGAGAAGTGCTCGTGCTACGAGCGGCTGAAGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGCGCGCGCGCGGGACGCGGTGCGCGCGCGcgacgcggcggcggcggcggcgggccgcGCCTTCGTGGAGGCGGCCGGCGCGCCCGACGCGCACGCGGGCGAGGCGTGCGGCAGCGTGCCGCCGCTGGCGCTCGTGTCGCGCGCCTCCGAGCAGCTGCTCAACGACGCGGGCGAGGGCACGCTAGACGTGCGGCTGGAGCGGCTGGTGAGCGCGAAGGCGGCGCTGGAGGGCGAGGTGCGAAAGTTGAAGCTGCAGCTCAACGACGAGCGCGCCGCGCGACAGAACGGCGTCGCCTCGCACCTCGACCGCGACCACGAGTCCGAGTTGGAGACGCTGCGCAAGTCGGTGGCGGAGGCAAaagggcgcgcggcgcgcgcggaggCGGAGGCGGCGCTGCAGGCGGCGGCCGTGGCGCGGCTGGAGGCGCAGGTGGCGCGGCTGCGCGCGCGGCAGGACCACCAGGACGAGCACGAGGAGATGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCGCGAGAGGCTCTCAACCGAGTGGAGGAACTGGAGACGGAGAACAGCCACCTCACCAAGCGGCTCGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MAKRSEFATPENSDEESGGAFTDGDFDGIDDEAIVEPDEYVNETVNTNITDPNSSVRSVEEQVDGLAMKINVNGANYEDLNNQSASEESGDFSRDSQSEGNTSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGGRLAALSPSVMHSPRRSSEDSDDVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHREKCSCYERLKREHASLEREVARARDAVRARDAAAAAAGRAFVEAAGAPDAHAGEACGSVPPLALVSRASEQLLNDAGEGTLDVRLERLVSAKAALEGEVRKLKLQLNDERAARQNGVASHLDRDHESELETLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01021247;
- 90% Identity
- -
- 80% Identity
- -