Carc028687.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- clz9
- Assembly
- GCA_036785405.1
- Location
- JAWDAA010000032.1:2776696-2779020[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-10 9.6e-08 32.5 0.2 3 45 17 60 16 60 0.96
Sequence Information
- Coding Sequence
- ATGCCTCGAGCTTACGAAAGAAAGACCGATAGAAGTTCTTACCCGAAAGAAAAACTATTAGAAGCAGTTAGGGCCGTTAAAAGTGGCGCTTTGTCAGGTTATGCAGCCTCAAAACATTATGGTATACCAAGAGCGACTATAATCAATCGGGTATATGAGCGTAAAGGTATGAAATCAAATACTTTGGGGAGGGCCACGGTTTTATCGCAAGATGTAGAAGAAAACCTTGTAAAAAATTTGCATGTGATGGAGAGATATGGCTTTGGCTTGACGAGAAAGGAATTAATAGAGACTGTGGGGCAATATGTCACAGCGAAAGCTGTGCATAGTCCGTTCAAAAACGGAAGTCCTGGAGAGGACTGGTTCCTTTCATTTAAAAAACGACATAATATCTCTGTGAAAAAGCCGCAGCCGGTGGAGTATGTCAGAAAAAATGCATGCAGGCCTAATGTGCTATACCCATATTTCGATTTGCTTGAAGAAACAGTCAACCAACTAGATCTTCATGACAAACCATCCCATATTTGGAATGTCGACGAGACAAGCTTTAGTAAAGACCCCTCTAAGGCAAAAGTCGTTGGATTAAAAGGATATACTTCCACAAGAACAATATCATCTCCTGGGAAAGATAACACAACCGTCTTGCTGGGGTGTAATGCTATTGGAGAAAAAACTCCCCCTTTAATTATATTCAAGGGTAAAAGCGTATGGGACGAGTGGACGTCACAAGAAGGGTACCCAGGAACAGCGTATGCCGCAACAGCTAATGGGTGGATGGAGACAGCTGTATTTGAGGCGTGGTTTCAAAAGGTTTTTCTGCCAACTGTGGGACAAAAGCGGCCCATACTTTTAATATACGATGGGCACTCCACCCACGTGGGAATAAATATTATTGAGAAGGCCCGAGCAGCACAAATAACGATTTTGAAGATTCCTCCTCATACCAGCGATGTGTTGCAGCCGTTAGATTTGGCTGTTAATAAACCTTTTAAAGATAGATGGGATGCAGCTTTGGTCAAGTGGCAACGATTAAACATTGGTAAGAAACTGCCAAAAAAAGAGTTCGCAAAAATTATTGGCCAAATTTGGACTGCAATAGATCCTAATGTGGCTGCAGCTGGGTTTAAAAAGGCGGGTATTTACCCACTAAACAAATATATTGTTCCAGAATCTAAATTTAATCAATTGCTTTTGCGAGAGTGGAAACAAACAACAATGTCACTTGTTAACCATTTTGGTGACGTTAAAACAAAGTCTTCAGACATATGTCCTTTAACACTAGATCAACAAAACAGTCAGCAAATTAGACGTTTAAATCCAGATTCGTTACTTAACATCACTTTGGCAAGGATTAATTGTATATATCAGGCACACAGTCAACCACAGCAAAGGCTGAAAAATTTGAATGATTTAGCAGGATGTTCAAAAAATTTATCTAAAACAGAAAATCCAAAGCCTAAAATACATATTCTTGAGGACCGGATGATTACGTTTGAAGATTTATTACTCATGAATATAAAAGCAGGCacaagtaataatataaaaagaaaaagaattgcCCCTGGCGCAGAAGTAATTACGCACGACGATGTTTACAAAAGATGTAAGCAAGTGGAAGTAGAAAAAGCTGAAAAATTGAAGCAAAAACAAGAAAAGAAATCCAAAGCGAAtttaaaacaagaaataaagCAAAAATCTAAATCACAGTTAAAAACTACGTGTTCTAAAAAAGAGAGTAATaagaaattatcaaaaaaaaagaagactAGAGTGCGAGTTGAATCATCCAGCGAAAGTGAAGTAGAGATGAAAATCATGGATGAAAGTGAAGATGATGAAGACTTTGAACAGTATTGCAAAGATCTTTACAAGCAAGATGATGAAGAAGAAGGAGAAGAAGAGGAGATTGATGATATAAATAAGCAGACcgatgaaaacaaaacaaatataaaaacacgGATGCGAGATATGGAAATGGAGGATGAGagtaaagaaaataaagaaaacacgCAAAAAGCAGAAAACTCAAATTTAAATGTTGTTCGAAACGATTGGCTTTTGGTTAAGTTTTGCACAAAACGATCTGTGAAACATTACGTTGGAGTAGTGCTCCGCATCACAGATGATGGTGTTCCAGTTGTCCAATATGTAAGAAAGACACTGACTAAAGTAGAAGACCAGACAATGTTCACTTATCCCGCATTGGAAGATATATCTGAGGTAAAGCATCAAGAagatattgttattaaattgCCTAAGCCAGTTATTGGCCGTAGAGgccaaatagtttttaaaatgtctttcaaaacttttaatgttcagtaa
- Protein Sequence
- MPRAYERKTDRSSYPKEKLLEAVRAVKSGALSGYAASKHYGIPRATIINRVYERKGMKSNTLGRATVLSQDVEENLVKNLHVMERYGFGLTRKELIETVGQYVTAKAVHSPFKNGSPGEDWFLSFKKRHNISVKKPQPVEYVRKNACRPNVLYPYFDLLEETVNQLDLHDKPSHIWNVDETSFSKDPSKAKVVGLKGYTSTRTISSPGKDNTTVLLGCNAIGEKTPPLIIFKGKSVWDEWTSQEGYPGTAYAATANGWMETAVFEAWFQKVFLPTVGQKRPILLIYDGHSTHVGINIIEKARAAQITILKIPPHTSDVLQPLDLAVNKPFKDRWDAALVKWQRLNIGKKLPKKEFAKIIGQIWTAIDPNVAAAGFKKAGIYPLNKYIVPESKFNQLLLREWKQTTMSLVNHFGDVKTKSSDICPLTLDQQNSQQIRRLNPDSLLNITLARINCIYQAHSQPQQRLKNLNDLAGCSKNLSKTENPKPKIHILEDRMITFEDLLLMNIKAGTSNNIKRKRIAPGAEVITHDDVYKRCKQVEVEKAEKLKQKQEKKSKANLKQEIKQKSKSQLKTTCSKKESNKKLSKKKKTRVRVESSSESEVEMKIMDESEDDEDFEQYCKDLYKQDDEEEGEEEEIDDINKQTDENKTNIKTRMRDMEMEDESKENKENTQKAENSNLNVVRNDWLLVKFCTKRSVKHYVGVVLRITDDGVPVVQYVRKTLTKVEDQTMFTYPALEDISEVKHQEDIVIKLPKPVIGRRGQIVFKMSFKTFNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00407506;
- 90% Identity
- iTF_00352990;
- 80% Identity
- iTF_00352991;