Basic Information

Insect: Coenonympha arcania
Gene Symbol: sn
Assembly: GCA_036785405.1
Location: CM072066.1:17439958-17444959[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.2e-10 9.3e-08 32.5 0.2 3 45 17 60 16 60 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.2e-10	9.3e-08	32.5	0.2	3	45	17	60	16	60	0.96

Sequence Information

Coding Sequence: ATGCCTCGAGCTTACGAAAGAAAGACCGATAGAAGTTCTTACCCGAAAGAAAAACTATTAGAAGCAGTTAGGGCCGTTAAAAGTGGCGCTTTGTCAGGTTATGCAGCCTCAAAACATTATGGTATACCAAGAGCGACTATAATCAATCGGGTATATGAGCGTAAAGGTATGAAATCAAATACTTTGGGGAGGGCCACGGTTTTATCGCAAGATGTAGAAGAAAACCTTGTAAAAAATTTGCATGTGATGGAGAGATATGGCTTTGGCTTGACGAGAAAGGAATTAATGGAGACTGTGGGGCAATATGTCACAGCGAAAGCTGTGCATAGTCCGTTCAAAAACGGAAGTCCTGGAGAGGACTGGTTCCTTTCATTTAAAAAACGACATAATATCTCTGTGAAAAAGCCGCAGCCGGTGGAGTATGTCAGAAAAAATGCATGCAGGCCTAATGTGCTATACCCATATTTCGATTTGCTTGAAGAAACAGTCAACCAACTAGATCTTCATGACAAACCATCCCATATTTGGAATGTCGACGAGACAAGCTTTAGTAAAGACCCCTCTAAGGCAAAAGTCGTTGGATTAAAAGGATATACTTCCACAAGAACAATATCATCTCCTGGGAAAGATAACACAACCGTCTTGCTGGGGTGTAATGCTATTGGAGAAAAAACTCCCCCTTTAATTATATTCAAGGGTAAAAGCGTATGGGACGAGTGGACGTCACAAGAAGGGTACCCAGGAACAGCGTATGCCGCAACAGCTAATGGGTGGATGGAGACAGCTGTATTTGAGGCGTGGTTTCAAAAGGTTTTTCTGCCAACTGTGGGACAAAAGCGGCCCATACTTTTAATATACGATGGGCACTCCACCCACGTGGGAATAAATATTATTGAGAAGGCCCGAGCAGCACAAATAACGATTTTGAAGATTCCTCCTCATACCAGCGATGTGTTGCAGCCGTTAGATTTGGCTGTTAATAAACCTTTTAAAGATAGATGGGATGCAGCTTTGGTCAAGTGGCAACGATTAAACGTTGGTAAGAAACTGCCAAAAAAAGAGTTCGCAAAAATTATTGGCCAAATTTGGACTGCAATAGATCCTAATGTGGCTGCAGCTGGGTTTAAAAAGGCGGGTATTTACCCACTAAACAAATATATTGTTCCAGAATCTAAATTTAATCAATTGCTTTTGCGAGAGTGGAAACAAACAACAATGTCACTTGTTAACCATTTTGGTGACGTTAAAACAAAGTCTTCAGACATATGTCCTTTAACACTAGATCAACAAAATAGTCAGCAAATTAGACGTTTAAATCCAGATTCGTTACTTAACATCACTTTGGCAAGGATTAATTGTATATATCAGGCACACGGTCAACCACAGCAAAGGCTGAAAAATTTGAATGATTTAGCAGGATGTTCAAAAAATTTATCTAAAACAGAAAATCCAAAGCCTAAAATACATATTCTTGAGGACCGGATGATTACGTTTGAAGATTTATTACTCATGAATATAAAAGCAGGCacaagtaataatataaaaagaaaaagaattgcCCCTGGCGCAGAAGTAATTACGCACGACGATGTTTACAAAAGATGTAAGCAAGTGGAAGTAGAAAAAGCTGAAAAATTGAAGCAAAAACAAGAAAAGAAATCCAAAGCGAAtttaaaacaagaaataaagCAAAAATCTAAATCACAGTTAAAAACTACGTGTTCTAAAAAAGAGAGTAATaagaaattatcaaaaaaaaagaagactAGAGTGCGAGTTGAATCATCCAGCGAAAGTGAAGTAGAGATGAAAATCATGGATGAAAGTGAAGATGATGAAGACTTTGAACAGTATTGCAAAGATCTTTACAAGCAAGATGATGAAGAAGAAGGAGAAGAAGAGGAGATTGATGATATAAATAAGCAGACcgatgaaaacaaaacaaatataaaaacacgGATGCGAGATATGGAAATGGAGGATGAGaCCACGATGAACGGTCTGAACGGTCACAGCAACGGCGACATGAACGGCGCCGGCGACATCATCACACAGAACCAACAGCGCGGCTGGTGGACCATCGGCCTCATCAACTCGCGCTACCGCTACCTCACCGCAGAGACCTTCGGCTTCAAGATCAACGCGAACGGCACCAGCCTCAAGAAGAAACAGATATGGACCCTGGAGCCGGCCTCGGGGAACGCCAATGACAGTAAGTTTCTTAGTAGAGCTATCGACAACCTATCTCACAAAGCGTGTGAATCATCCTTGTGA
Protein Sequence: MPRAYERKTDRSSYPKEKLLEAVRAVKSGALSGYAASKHYGIPRATIINRVYERKGMKSNTLGRATVLSQDVEENLVKNLHVMERYGFGLTRKELMETVGQYVTAKAVHSPFKNGSPGEDWFLSFKKRHNISVKKPQPVEYVRKNACRPNVLYPYFDLLEETVNQLDLHDKPSHIWNVDETSFSKDPSKAKVVGLKGYTSTRTISSPGKDNTTVLLGCNAIGEKTPPLIIFKGKSVWDEWTSQEGYPGTAYAATANGWMETAVFEAWFQKVFLPTVGQKRPILLIYDGHSTHVGINIIEKARAAQITILKIPPHTSDVLQPLDLAVNKPFKDRWDAALVKWQRLNVGKKLPKKEFAKIIGQIWTAIDPNVAAAGFKKAGIYPLNKYIVPESKFNQLLLREWKQTTMSLVNHFGDVKTKSSDICPLTLDQQNSQQIRRLNPDSLLNITLARINCIYQAHGQPQQRLKNLNDLAGCSKNLSKTENPKPKIHILEDRMITFEDLLLMNIKAGTSNNIKRKRIAPGAEVITHDDVYKRCKQVEVEKAEKLKQKQEKKSKANLKQEIKQKSKSQLKTTCSKKESNKKLSKKKKTRVRVESSSESEVEMKIMDESEDDEDFEQYCKDLYKQDDEEEGEEEEIDDINKQTDENKTNIKTRMRDMEMEDETTMNGLNGHSNGDMNGAGDIITQNQQRGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSKFLSRAIDNLSHKACESSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00407506;
90% Identity: iTF_00352992; iTF_00352991;
80% Identity: -