Csp006932.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000004.1:2255515-2257218[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.2e-114 7.9e-110 367.3 37.6 1 300 29 326 29 326 0.97 2 3 0.0084 2.1e+02 1.5 2.0 122 171 326 375 324 379 0.87 3 3 0.032 7.9e+02 -0.5 4.9 196 237 359 399 343 401 0.55
Sequence Information
- Coding Sequence
- ATGGAGTCTACGGTTGCGGGACGAAGGCGTACCGCCACTAGACACTCGGCTGAGGATCAGGCGCTTGATCAAATTGCCAAGGAGGCAGAAGCGAGATTGGCAGCAAGAAGACAAGCGAGAGCTGAGGCTAGAGAAATTAGAATGAGGGAATTAGAGAGACAGCAAAAAGAGGCTGAGGAGAATGCCGATCGTGTTTACGACATGTGTACATCCGATGGAAGGACCATAAGGGTCACACCAGACCCAATTAGAACATCACGTCTCCTcacaaattcaaataattttcaatcgaGTCGAAGATCCTCGGAAGATTCCCTAGAGGATGCAGGTTTAACGAGGGATATAAGATTAGAATTAAaagaatttgaggaaaaattcaGAAGAGCTATGATTGCTAATGCTCaacttgataatgaaaaatcttcATACTCTTATCAAGTGGAATTATTGAAAGATAAATTAGAGGAGTTGGAGGAGTCATCGGCGACACTTAGACGTGAACtcagggaaaaaaatagagagtCTGAACAACTAAAACGAGTTAATCAACGATTAAAAGAGGAATTGGAACTCTGCAAAGCTCAATTGTTAGAGAGAGATACACTTATACAGGATAATGGGCTTGTTATAGTTGAAGATGAGGGGAGTGAGAATGAGGAGACGGGAATTATGAATAATGGTGTAGTTAACAGAAAGAGAGTGCTAGTCAGTACAGAGGCTGCTGAGTTGTTGCAAAATGCTGGTGAAGGTTCATTAGacgtTCGATTGAGGAAATTTGCCTCggagaaaaaagaattacAAGATGAAATAAGACATTTAAGATTAGATTTGGAGGAAGCCAAGAATCGAACTAGATCTGAAAGATCATCAGGATCAGTATTAAGTCTAGCTGATTCTGAGGATGTTCAACGAGAGGCAAATAAATTACTGGCAGATTATAAATTTAAACTGCAAAAAGCAGAGCAGGATATGTCTACATTGCAAGCAACAGTGGCAAGGTTAGAGAGTCAAGTTATTCGTTATAAATCAGCAGCAGAGGCATCAGAAAAGGTGGAAGATGAGCTCAAAGTTGAAAAGCGTAAATTACAAAGAGAGGTGAGAGAATCACAGGGTCGTGTTGAAGAACTCGAGACAGCAAATTCTCACCTTCAACGACGTTTGGATAAACTAAAAAATGCCAAGTCTGCCCTTTTGAAAGAACTCTGA
- Protein Sequence
- MESTVAGRRRTATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCTSDGRTIRVTPDPIRTSRLLTNSNNFQSSRRSSEDSLEDAGLTRDIRLELKEFEEKFRRAMIANAQLDNEKSSYSYQVELLKDKLEELEESSATLRRELREKNRESEQLKRVNQRLKEELELCKAQLLERDTLIQDNGLVIVEDEGSENEETGIMNNGVVNRKRVLVSTEAAELLQNAGEGSLDVRLRKFASEKKELQDEIRHLRLDLEEAKNRTRSERSSGSVLSLADSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKVEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00687172;
- 80% Identity
- -