Csp020819.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000026.1:311891-312501[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-14 2e-11 43.8 0.0 3 38 16 52 14 56 0.91 2 2 0.71 7.9e+02 0.3 0.0 10 25 51 65 50 65 0.85
Sequence Information
- Coding Sequence
- ATGAGAAACTACAAGAGAAAGACTGATAGACAAAGCTGGAGTTCCACTGATATGGCTCATGCCATTGCAATggttgttgaaaaaaaattgggtatTAATAAGGCAGCACAATTATTCTCAGTACCTAGTACAACATTGCAGAATAGAGTTAAGAAATATCAGAGTGGGTGTTCACTGGAGGAAGCTGCTAAAAAAGgtcTAGGAAAATTTAAAGCAATTTTTACGGAACAACAAGAAAAAGCTCTTGTGGAATACATTCAACAAGTTCAGAAGAACAATACTGAGAAATTCACAACAAAGGATCTGAGAAAGCTTGCCTATCAGCTGGCTGAAAAGTGCAACGTTCAGCATAAATTTAATGCTGAGGATGGCATGGCAGGATTAGACTGGTACACTGGTTTCATGAAGAGGCATCCTGAGCTCTCATTTCGTAAGCCCAAAAATTCAGAAGACTATCCAGATCATCACGACTGtcttgaaattattcttgaagagCCTGAGCTCAAAACAGAGCCAGTAGATCCCTCAAAATCTTCCAAATAA
- Protein Sequence
- MRNYKRKTDRQSWSSTDMAHAIAMVVEKKLGINKAAQLFSVPSTTLQNRVKKYQSGCSLEEAAKKGLGKFKAIFTEQQEKALVEYIQQVQKNNTEKFTTKDLRKLAYQLAEKCNVQHKFNAEDGMAGLDWYTGFMKRHPELSFRKPKNSEDYPDHHDCLEIILEEPELKTEPVDPSKSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00046885;
- 90% Identity
- iTF_01273703;
- 80% Identity
- -