Chom004638.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- pnr
- Assembly
- GCA_004302925.1
- Location
- PYHX01003515.1:7516-10456[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4 1.1e+04 -4.0 1.7 1 5 375 379 375 380 0.78 2 2 7.8e-18 2.6e-14 52.4 6.5 1 34 427 459 427 461 0.97
Sequence Information
- Coding Sequence
- CCTGCtacacaacaacagcagcagcaacaacaacaaaatcctaCAACTATAATACAAACACAACAATCACAACCAATTAATGCTGttatacaaacacaaaataatcaacaacaacaacaacctcagccacaacagcagcaacaacctCAGCCactaccacaacaacaacagcatcccAGTCAAGAGGATTATGTACCAATACAAAGGACTCAACAACGCAGATTTATAACAACTTCAGGAGAATTGGTCCATCGTGATTCGGATGATCCCGAAACGGTTAACGAATATCAACGTCAGCGACACTCTCCCGCCGAATACGTACAAATGGCTCCACGCAGTGAAGATCAACAGCCACCGCCCGGCACTACGCTCTACACTTATACGACTAATGAAAATGGTCAACCGATTATATGTACAGCTGATGCTGCCGGTGGTACTATAAAACTGGAATCAATCGATAAAGATCAAGTGCAAAATGATGCGGCccaacaattgcaacaacaacaacaacagcaacatcaacaatGTCCCACCCCTAATGGTAATTACCCCGAATCAATGGTGGTTTCTTTACACCATCAAAATCCACATAATTTATCTAGTACCGCACACTCGACCATATCGGCCCATCCCACCCATTTGTTACGTTTCGAAGATGATCAACGTTTTGGTCAGACAATTGCAGATAACGGTAATGGTCCCGCCACTTTATACTATGAAACTGTAGTTGATCCCAGTGCCCATCCTAATGAGTCGAAAACCTTTACAGATTTGGGCAATGCTCATTACTTGAACTATTCTTCGACATCGTCGTATCAGTTGAGTCAAAATAATACCATCTACAGCGTATCGCCTGCTCCCAATCAATTGATTACGAAAAATGATCCCAATCTAAATATTTTACGACAACCCGTGCAATATCAACCCATGACTTTGTTCGACAATAGTTCAGTGACCGAACAAAGTATATGGTCATCGCCGGGTGTGGAGTATTCCAATATGGGTTTTAATTATCATCAGCAGGTGGTCGAAGAATATCCCTCGGGTAATTTAACGGCCAGCACTTGGGCACCCACTAGTTCTATAACTCACTATGAAGCTCCACCACCTTTGGCCGATAAATGTGAACAATGTAATTCACCTTTGGGCAGTAAAGCTAATGGCTATTGTACCTCTTGCTATGGAGGTCCTATACGTCAAACAGTACGAGTGGGTCCCCGACAAACAAAACCTAAAGCCACTGCTGCCGCTGCCAACAATAGACGGACTGGTGTTACTTGTGCTAATTGTCAAACTAATTCAACGACTTTATGGCGTCGTAATAATGATGGCAATCCAGTGTGTAATGCTTGTGGTCTATATTTCAAGCTGCACAATATGAATCGTCCTCTGTCTATGAAAAAGGACGGCATACAGAAGCGCAAACGTAAACCAAAGAATAACGGTGGTCCAGCCATGAGAACTCAATTACCcaGTTTACCTCCCGGTGGTGGTAATTTAATGGTCCATTCTAATGGTCCTTTATATCCTTCACAAATCCAAACGATTGGTCTGCCTTTAAATGCTCAACCACCAAATCCAGCTGAACTACAAGATATGACCACAACTGCAACACGAACTGTTGCCATTGGTCATCCCGATATGACTTTGAACATGTCAAGGCCCCATGTTACAACCGATAATCATTCACCCTATAGTAATCCACCTTCACAGAGTCAATCACCTCATCTTCCAACTACAGCGAATTTCAAAGTTCCACCCATAGAAGTGCCCCGAACAACTCAAAGTAGTGAAATACCCACAAGTGTTATAACACGTACTGGTCTACCAGAACGTACATCGAATAATTGA
- Protein Sequence
- PATQQQQQQQQQNPTTIIQTQQSQPINAVIQTQNNQQQQQPQPQQQQQPQPLPQQQQHPSQEDYVPIQRTQQRRFITTSGELVHRDSDDPETVNEYQRQRHSPAEYVQMAPRSEDQQPPPGTTLYTYTTNENGQPIICTADAAGGTIKLESIDKDQVQNDAAQQLQQQQQQQHQQCPTPNGNYPESMVVSLHHQNPHNLSSTAHSTISAHPTHLLRFEDDQRFGQTIADNGNGPATLYYETVVDPSAHPNESKTFTDLGNAHYLNYSSTSSYQLSQNNTIYSVSPAPNQLITKNDPNLNILRQPVQYQPMTLFDNSSVTEQSIWSSPGVEYSNMGFNYHQQVVEEYPSGNLTASTWAPTSSITHYEAPPPLADKCEQCNSPLGSKANGYCTSCYGGPIRQTVRVGPRQTKPKATAAAANNRRTGVTCANCQTNSTTLWRRNNDGNPVCNACGLYFKLHNMNRPLSMKKDGIQKRKRKPKNNGGPAMRTQLPSLPPGGGNLMVHSNGPLYPSQIQTIGLPLNAQPPNPAELQDMTTTATRTVAIGHPDMTLNMSRPHVTTDNHSPYSNPPSQSQSPHLPTTANFKVPPIEVPRTTQSSEIPTSVITRTGLPERTSNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00760661;
- 90% Identity
- iTF_00350668; iTF_00350669;
- 80% Identity
- -