Chom011462.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- pnr
- Assembly
- GCA_004302925.1
- Location
- PYHX01001502.1:21063-24338[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4 1.3e+04 -4.2 1.7 1 5 472 476 472 477 0.78 2 2 9.3e-18 3.2e-14 52.2 6.5 1 34 524 556 524 558 0.97
Sequence Information
- Coding Sequence
- ATGGAAACACAAgcgcaacaacaacagcagcagcaacaacaacaagatcatatgcaacaacaacagcaaagatatcaacaacagcagcaagtACAACAACAATCACCAGAAAAATATCACACACAtttattagataaaattaaaactgaaaataacgGAAATAATGGATCAGAACATTTAAATCTTTCGACAACAAATTCAGTGATTGAAAAACAAACACAAGTtgatcagcagcaacaacagcaacaaccacaacaattAACAACACATcaacatcaacagcagcagcaacaattaGCTCCTGctacacaacaacagcaacaacaacaaaatcctaCAACTATAATACAAACACAACAATCACAACCAATTAATGCTGttatacaaacacaaaataatcaacaacaacaacaacctcagccacaacagcagcaacaacctCAGCcaccaccacaacaacaacagcatcccAGTCAAGAGGATTATGTGCCAATACAAAGGACTCAACAACGCAGATTTATAACAACTTCAGGAGAATTGGTCCATCGTGATTCGGATGATCCCGAAACGGTTAACGAATATCAACGTCAGCGACACTCTCCCGCCGAATACGTACAAATGGCTCCACGCAGTGAAGATCAACAGCCACCGCCCGGCACTACGCTCTACACTTATACGACCAATGAAAATGGTCAACCGATTATATGTACAGCTGATGCTGCCGGTGGTACTATAAAACTGGAATCAATCGATAAAGATCAAGTGCAAAATGATGCGGCccaacaattgcaacaacaacaacagcaacatcaacaatGTCCCACCCCTAATGGTAATTACCCCGAATCAATGGTGGTTTCTTTACACCATCAAAATCCACATAATTTATCTAGTACCGCACACTCGACCATATCGGCCCATCCCACCCATTTGTTACGTTTCGAAGATGATCAGCGTTTTGGTCAGACAATTGCAGATAACGGTAATGGTCCCGCCACTTTATACTATGAAACTGTAGTTGATCCCAATGCCCATCCTAATGAGTCGAAAACCTTTACAGATTTGGGCAATGCTCATTACTTGAACTATTCTTCGACATCGTCGTATCAGTTGAGTCAAAATAATACCATCTACAGCGTATCGCCTGCACCCAATCAATTGATTACGAAAAATGATCCCAATCTAAATATTTTACGACAACCCGTGCAATATCAACCCATGACTTTGTTCGACAATAGTTCAGTGACCGAACAAAGTATATGGTCATCGCCGGGTGTGGAGTATTCCAATATGGGTTTTAATTATCATCAGCAGGTGGTCGAAGAATATCCCTCGGGTAATTTAACGGCCAGCACTTGGGCACCCACTAGTTCTATAACTCACTATGAAGCTCCACCACCTTTGGCCGATAAATGTGAACAATGTAATTCACCTTTGGGCAGTAAAGCTAATGGCTATTGTACCTCTTGCTATGGAGGTCCTATACGTCAAACAGTACGGGTGGGTCCCCGACAAACAAAACCTAAAGCCACTGCTGCCGCTGCCAACAATAGACGGACTGGTGTTACTTGTGCTAATTGTCAAACTAATTCAACGACTTTATGGCGTCGTAATAATGATGGCAATCCAGTGTGTAATGCTTGTGGTCTTTATTTCAAGCTGCACAATATGAATCGTCCTCTGTCTATGAAAAAGGACGGCATACAGAAGCGCAAACGTAAACCAAAGAATAACGGTGGTCCAGCCATGAGAACTCAATTACCcaGTTTACCTCCCGGTGGTGGTAATTTAATGGTCCATTCTAATGGTCCTTTATATCCTTCACAAATCCAAACGATTGGTCTGCCTTTAAATGCTCAACCACCAAATCCAGCTGAACTACAAGATATGACCACAACTGCAACACGAACTGTTGCCATTGGTCATCCCGATATGACTTTGAACATGTCAAGGCCCCATGTTACAACCGATAATCATTCACCCTATAGTAATCCACCTTCACAGAGTCAATCACCTCATCTTCCAACTACAGCGAATTTCAAAGTTCCACCCATAGAAGTGCCCCGAACAACTCAAAGTAGTGAAATACCCACAAGTGTTATAACACGTACTGGTCTACCAGAACGTACATCGAATAATTGA
- Protein Sequence
- METQAQQQQQQQQQQDHMQQQQQRYQQQQQVQQQSPEKYHTHLLDKIKTENNGNNGSEHLNLSTTNSVIEKQTQVDQQQQQQQPQQLTTHQHQQQQQQLAPATQQQQQQQNPTTIIQTQQSQPINAVIQTQNNQQQQQPQPQQQQQPQPPPQQQQHPSQEDYVPIQRTQQRRFITTSGELVHRDSDDPETVNEYQRQRHSPAEYVQMAPRSEDQQPPPGTTLYTYTTNENGQPIICTADAAGGTIKLESIDKDQVQNDAAQQLQQQQQQHQQCPTPNGNYPESMVVSLHHQNPHNLSSTAHSTISAHPTHLLRFEDDQRFGQTIADNGNGPATLYYETVVDPNAHPNESKTFTDLGNAHYLNYSSTSSYQLSQNNTIYSVSPAPNQLITKNDPNLNILRQPVQYQPMTLFDNSSVTEQSIWSSPGVEYSNMGFNYHQQVVEEYPSGNLTASTWAPTSSITHYEAPPPLADKCEQCNSPLGSKANGYCTSCYGGPIRQTVRVGPRQTKPKATAAAANNRRTGVTCANCQTNSTTLWRRNNDGNPVCNACGLYFKLHNMNRPLSMKKDGIQKRKRKPKNNGGPAMRTQLPSLPPGGGNLMVHSNGPLYPSQIQTIGLPLNAQPPNPAELQDMTTTATRTVAIGHPDMTLNMSRPHVTTDNHSPYSNPPSQSQSPHLPTTANFKVPPIEVPRTTQSSEIPTSVITRTGLPERTSNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331998;
- 90% Identity
- iTF_00350667;
- 80% Identity
- iTF_00350669;