Chom000098.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- lrrfip2
- Assembly
- GCA_004302925.1
- Location
- PYHX01002589.1:643679-648146[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-118 7.7e-114 379.9 26.8 1 299 11 307 11 308 0.93 2 2 0.032 5.4e+02 -0.4 3.7 220 245 336 361 311 382 0.47
Sequence Information
- Coding Sequence
- ATGTTTACCTTCGTCTCACCCTTCCTGAACGCTGAGGCTAGATTAGCTGCTAGAAGGCATGCCAGAGCAGAAGCTCGAGAAATACGTATGCGTGAATTAGAACGTCAGCAAAAGGAACAAGAATCTAATGCAGATCGAGTATTTGATATGCATTCAAATGTTACCGGCGTAACACCATTGTCACACATGCGTCTGGGTTTAGGAAGTTCACCTATAACTGGTTTATTAAACTCTACGCGAGGCAATTCCATGTCATCAAGACGTAGTAGTGAAGATTCACTAGAAGAGGAAGGTCGCAGTTTAAGGGATATACGTCATGAGTTAAAGGATGTGGAAGAACGTTTTCGCAAGGCAATGATAGCGAATGCCCAGTTGGATAATGATCGTGCCTCACAGACCTATCAAATACAATTGCTTAAGGATAAACTGGAAGATATGGAAGAATCATATGCACAATTACAGCGAGAGTGTAAGGAAAAGACACGCGATTGTAATGCCTTGAAACGTTCATTGGATAAATTAAGTGAAGAATTAAAACTGGTACAGGGTCAATTAAATGAGCGTGATACACTGATAGCAGAACAGGGTTTAGTTATTGTGGCAATTGAAAATGAAGATGGCACAGATGCCAAACGTGCTCTAGTCACTGTTGAGAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAGTTTAGCGAAGAGAAACAACAACTGCAAAATGAAGTCCAACAATTGCAGGAACAATTAGAATCTTATAAAAGTCAGGGTAAAGGTCGAGGTAAAGGTAGTTCTTCAAATGGTCCATTAGGTtcagatgatgatgattatgaagCTCAAAgagAAGCTAataaaatcatctcagattataaatataaattacaaaaagcaGAACAGGAAATTGCTAGTCTACAATCCAGTTTAGCTAGATCGGAGACACAAGTTATACGTTATAAAAGTACAGCAGAAGCGGCCGAAAAAGCTGAGGCCGAATTAAAAATCGAAAGAAGGAAACTGCAAAGAGAAAATCGCGAGGCCATGGAAAAACTGGAAGAGTTGGAAACCTCAAATAATCATTTGCTTAAACGTTTGGATAAATTAAAGAATGCCAAAAGTGCTTTGCTGAAAGATCTCTGA
- Protein Sequence
- MFTFVSPFLNAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSNVTGVTPLSHMRLGLGSSPITGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYAQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVTVENAQLLGSVQGSLDVRLKKFSEEKQQLQNEVQQLQEQLESYKSQGKGRGKGSSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00331516;
- 90% Identity
- iTF_00331516;
- 80% Identity
- -