Cmar014200.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- l(2)dtl
- Assembly
- GCA_900005825.1
- Location
- CVRI01000054.1:969546-977188[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2 1.4e+04 -3.5 0.1 21 45 731 755 722 759 0.71 2 9 0.002 14 6.1 0.0 21 52 975 1006 970 1007 0.88 3 9 0.0006 4.2 7.8 0.0 21 44 1003 1026 1000 1031 0.91 4 9 0.0091 65 4.0 0.0 21 45 1031 1055 1027 1063 0.90 5 9 0.046 3.2e+02 1.8 0.0 21 45 1087 1111 1081 1118 0.82 6 9 0.00067 4.7 7.6 0.1 23 47 1117 1141 1111 1147 0.84 7 9 0.063 4.5e+02 1.3 0.0 22 44 1172 1194 1167 1198 0.88 8 9 0.0013 9 6.7 0.0 21 48 1199 1226 1194 1230 0.86 9 9 0.00083 5.9 7.3 0.1 21 45 1227 1251 1223 1257 0.91
Sequence Information
- Coding Sequence
- atgactaaaataaataacataacAGCTAGACTAATTAATAGGCAATATGGAAAATATTATGAAAAATCTTATGATAATGCTCTAGTAAGACTGATGGTGAGACCATGGGATAACTGGAGAGGAATAAATCCTTCAGGAATAGGAGCAGACTTTAATCCAGATCCGCCAATATTTGCGGCAAAATTTGCAAATACTGAAAACTATAATCACATTCTTGCGGTTGCCAACGAGGATGGAAGAATTGCACTACAAAATACTTTTGTTAAGAACTCTACAAGTGAAGATTTATCACTTGAAGGCGATCAATGCCATTACaaTGCAGTTTTTGATATCGCATGGATGCCTTATCATTTAAAGTTAATCAGTGCAAGTGGGGACCATACTGCCCGATTATGGGACGTTACAGAAAGCAAACTTATTAATATCCGAGAGTTTTGTGGACATTCACGATCAGTTAAAGTTGCTGCCTTTAGGAAGAACGATTGTTCTGTGTTCTCAACAGGTGGACGTGATGGAGCAATTCTTATCTGGGATTTGAGAAGTAACACAAACAACGAAGTTCAAAAAATTGACAATCGCATTTATAATGCACACATTGGTGGCGGTCCAACAACTCCATCAACAAGACGAAGAGGAAACAGATATGCAACTCCAAAGAATCAAACAAATGTCAGCAATTCGAGTGTGACTGGACTGATCTTTCAAAATGAGAACACTTTGGTGTCTTGTGGACCTGCAGACGGCGTCATCAAAATGTGGGACCTTCGAAGATGTTATTCAACACTTAAAAAAGAACCAGTAGCAAAGCATAGTTTGCCTTATGCTGGAAATTCCACATTAAAAGGCTtcacaaatttaattgttgatGATTCAGAAACGAGACTTTTCGCCAGTTGTATGGACAGCAAAATTTACAGCTACAACATCTCAGCTTATTCAAAAGAGCCGACAATGATTTATTCCGGTCTTCAAATTAATTCGTTTTATATAAAATCATGTTTAAGTCCTGATGGACGTTATCTGTTGAGCGGAAGTAGTGATGAAAAAGCTTACATTTGGAACATTGAAAATCCTCATCCTGTTGCATCATTGGTTGGACATAATTTTGAAGTAACTTGCGTTGCTTGGAGtaatcatcaaaataatttggATGGAGGAAATATGTGCATTGTCACTTGTTCAGATGATGCTTGTCACAAAGTATGGCGTGTTGGTCCGGAGTTTCTTCCAGAAGACGAAAGACTTTCTTTACGTGGTCATAGTGAACTTggtgaaaaatattatcagtATGAAAAGTCTAAACAAGttttaagaagaaagttaaaaGATTTAAGTCCTCGAACTTCGAATgcacaaaacaaacaaatcagAATGACTCCAACAAAAGCTGAAATCTCATCattgaaaagaagttttcaggAAATGTGCGCCGATGATCCAGAAATTGTTattgaaggaaatgaaagaaaacgacCGAATATTGAAGCTAAAGGAAGAAGACTTTTCCCTTCATCGCCATCTTCATGTATAGATCATTATTCAACTACTTCAGCTTCAAGACCACTTGAGACACTTTTTGAAGAGTTGAGTTCAACACAAAgccaaaattttcaaaatcttgtATCGTCTCCAGTTAAACGTCAAATAAACATCATAAAGTCACCGGAAAATTTACGTGTGAGTAAATCCAAGTCGCTAAATAAAGATCGAATGGAACCTTCCGTGAATTCTCCTACGATGAATCTTCCAAATTTTGTGATTGATGGTGATGCACCACATTTGAGTTTAATGTCACCCCATCGAAAaactaagaaagaaaatgtagATTGGTTGACAAAAATGCGTAAACAAAAATTACTGTCATTAAATAATGCATTGGAAAAAGCGACCACTGCCACAGAAATACAAAATGATCAGAACGATAAACTTCTCAAATctatagaaaataaaagtgaaagtcaagagaaaaagaaaagtcaaaagaaaacagaagCGACTATCTTAAAtaATGCGAttcgcaaaaaaaaactaactTGCGAATCGCGAGTGATGCAAAAGTTCGAAGCACAAAAACAAATGCAGAATTTTGGCTTTCCAACTGGCTCAAGAATTATTCTTTATGGAGGCAAAACCTGCGTTATTGCACCAGAACAAAAGACAAACACATCTACACCGACTGTAATTGGAACTATTGAGAGCCCTCAAATATGTCATTTATGCCAAAAAGAGTTTTCTTCGATAGAGACTCTTCAAAACCACATCAAGGAGCAGCATGTTGATAGTAAATTTTACCGCAATATTATCGCAGTTTCGACTGTAGGTAATCAAGTTACAATGATTCCAACTCCACTTCAACAATATCAAATAGGAACAAGTgcagtgaaaattgaaaaagatttccatCCAATACATGCAAAGTTGATTCCAGAAATTATAAAACCAAGCAATTCCGAGTTTGCCAACTCAGTTACTAATTTAAATATAGCTCATCCTGTAATTCAACATATTCAAATACAACcgagggaaaaagaaaaagcgaaCGTTGTGCAAGTCATAAAACAGAATCCAGTTGAATATCACATACAGCAACAGGAACATGCTGCCATGGTGGTTGCATCGATGAGCCAAAAATCAGGTGTTTGTAATCCATTTTTAAATAGTACCATTAAGTATGAACTTCATGGACAACCAGTTCAACTTGTATCAGAAGTGTATCCTCAAATGTTAGCTGAAGCTCCGAAATCCGACGACTTAAATTCACAGTCATCAGTGTCATCACCAGGATCTTCAGTTAATGTTCAAAATGCAACTGGCCCAATGCTTAGCAATGGTGAAACCATGGAAAAGCAACATAAATGTTTGGTCtgtgataaatttttcacGACTGTTGGAAACCTAAATATTCATCTAAAAATACATGCAGGAGAAAAACCTTACAaATGCACTGTGTGTGGGAAAGGATTCATTCAATCTAATAATCTTGCAACTCATATGAAGATTCATACAGGAGAAAAACCTCATGGTTGCCAGATATGTGGAAAAAGATTCAGTCAatctaataatttaaaaactcaCATAcGAACACACACAGGAGAAAAGCCATTCAAATGTACGCTTTGTGAGAAAAgctttaatcaaaaaaataatctcaCAACACATTTGAGAACTCACAGTGATTATCATCCTTCAAACTGTAGCATGTGCAATCAAACCTTTATGTCATTTAATGAGCTGTTTTCACATATGAGGGATCATGCTGAAGAGAAGCCTCACGTTTGCAGCGTTTGTAATAAAGTTTTCAGTgttcaaaatgatttaaatgatCACATGAAACAGCATTCGAATCCTAAGCCCTATAAATGTGATATTTGCCAAAAGCAATTTACACAATCTAACAATTTAAAAACTCACATCAAAACTCATATTTATCAAGATCCATTTAAATGCAGTATGTGCACAAGATCGTTTCAAGATCAAGAAGAATATCAATTGCACATgAGAGTTCATACTTTTGATAAACCTTACGAATGTACATATTgtggaaagaaattcattcaaagtaataatttaaaaactcaTGTGAGAACACATACTGGAGAGAAACCTTACGctTGTACTGTTTGTGGAAAGTCATTTAATcagaagaataatttaaatacgcaCTTGAGAGTTCACACAGGCGAGAAACCTTTCGAGTGTCATTTATGTGATCGACGATTTAAccaatcaaataatttaaataaacactTAAAGACACATGGACAAGAGAAGGAAATCAGTAAAGCTATGGAAacagaaatggaaaaaatgatgaacaacgtcattcaacaacaataa
- Protein Sequence
- MTKINNITARLINRQYGKYYEKSYDNALVRLMVRPWDNWRGINPSGIGADFNPDPPIFAAKFANTENYNHILAVANEDGRIALQNTFVKNSTSEDLSLEGDQCHYNAVFDIAWMPYHLKLISASGDHTARLWDVTESKLINIREFCGHSRSVKVAAFRKNDCSVFSTGGRDGAILIWDLRSNTNNEVQKIDNRIYNAHIGGGPTTPSTRRRGNRYATPKNQTNVSNSSVTGLIFQNENTLVSCGPADGVIKMWDLRRCYSTLKKEPVAKHSLPYAGNSTLKGFTNLIVDDSETRLFASCMDSKIYSYNISAYSKEPTMIYSGLQINSFYIKSCLSPDGRYLLSGSSDEKAYIWNIENPHPVASLVGHNFEVTCVAWSNHQNNLDGGNMCIVTCSDDACHKVWRVGPEFLPEDERLSLRGHSELGEKYYQYEKSKQVLRRKLKDLSPRTSNAQNKQIRMTPTKAEISSLKRSFQEMCADDPEIVIEGNERKRPNIEAKGRRLFPSSPSSCIDHYSTTSASRPLETLFEELSSTQSQNFQNLVSSPVKRQINIIKSPENLRVSKSKSLNKDRMEPSVNSPTMNLPNFVIDGDAPHLSLMSPHRKTKKENVDWLTKMRKQKLLSLNNALEKATTATEIQNDQNDKLLKSIENKSESQEKKKSQKKTEATILNNAIRKKKLTCESRVMQKFEAQKQMQNFGFPTGSRIILYGGKTCVIAPEQKTNTSTPTVIGTIESPQICHLCQKEFSSIETLQNHIKEQHVDSKFYRNIIAVSTVGNQVTMIPTPLQQYQIGTSAVKIEKDFHPIHAKLIPEIIKPSNSEFANSVTNLNIAHPVIQHIQIQPREKEKANVVQVIKQNPVEYHIQQQEHAAMVVASMSQKSGVCNPFLNSTIKYELHGQPVQLVSEVYPQMLAEAPKSDDLNSQSSVSSPGSSVNVQNATGPMLSNGETMEKQHKCLVCDKFFTTVGNLNIHLKIHAGEKPYKCTVCGKGFIQSNNLATHMKIHTGEKPHGCQICGKRFSQSNNLKTHIRTHTGEKPFKCTLCEKSFNQKNNLTTHLRTHSDYHPSNCSMCNQTFMSFNELFSHMRDHAEEKPHVCSVCNKVFSVQNDLNDHMKQHSNPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPFKCSMCTRSFQDQEEYQLHMRVHTFDKPYECTYCGKKFIQSNNLKTHVRTHTGEKPYACTVCGKSFNQKNNLNTHLRVHTGEKPFECHLCDRRFNQSNNLNKHLKTHGQEKEISKAMETEMEKMMNNVIQQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346909;
- 90% Identity
- iTF_00346909;
- 80% Identity
- iTF_00346909;