Cmar009266.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000048.1:1039696-1044396[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00082 2.2 8.6 0.6 11 35 217 236 212 243 0.77 2 13 0.4 1.1e+03 0.0 3.5 14 39 246 268 238 273 0.76 3 13 0.029 76 3.7 1.6 10 43 271 298 262 299 0.74 4 13 7.5e-05 0.2 11.9 2.3 16 41 322 344 316 345 0.90 5 13 0.17 4.4e+02 1.2 1.0 15 30 437 452 432 463 0.73 6 13 0.0015 4 7.8 2.8 9 43 463 494 459 495 0.87 7 13 0.011 30 5.0 7.3 11 44 495 525 493 525 0.86 8 13 0.0017 4.5 7.6 2.7 12 30 528 552 522 556 0.72 9 13 0.00017 0.46 10.8 1.3 13 40 558 582 550 588 0.88 10 13 5.1e-06 0.013 15.7 1.0 13 41 590 615 583 617 0.86 11 13 0.34 9e+02 0.2 0.3 18 30 623 635 618 645 0.77 12 13 0.0043 11 6.3 2.6 18 40 651 670 635 672 0.86 13 13 0.085 2.3e+02 2.2 0.5 18 41 679 699 678 701 0.77
Sequence Information
- Coding Sequence
- ATGGATGAAATATCAGACATAAAGCGCGATTTTAATATCAGCAGAATGTGTCGAACATGTTTAATAGAAACAGAAGATGAAATGCATGAGATATTTGCAAATTCACAACAAGATCCAGATGCATTAACACTTAATCAAGTTTTAACGCAATTTGCAGGAAATATTCAGCTCGAGCGTAATGATGGACTTCCTGATAAACTCTGCAAAGACTGCACTGAGAAAGCGTATTTATCTTATAACTTTAAAGCTACGATAGAACAAAGTGATGCGACACTTCGTAGCGTGttgttcaaagaaaattcaaatcataaaaaagaatcgaTGTTTGATGATGGAAGTGGAAATTATCTTATGGGAATCAAAACAGAAATAGCATTTGTCGATGCCGATCCTTTCATTGATGACGATGGTGATTTTGATGATGCAATTGATTATGCTGAAAACTCAAATAcatcaaatcaacaaaatgaTGCATACAACAATAATTCTTATCCACAAAATGTTGCGGAAGATTTGGTTTCACCTGAATCAGATGGCGAAGTTAGTGAAGAGAATCCTGATATGAAGCCAccaaaagagaaaacaaaaaagaatcttaaTCAGCTTATATCACCAAGACTCGTTGAAAACATCGATTACACCAAggatgaagaaggaaaatatgtttgtcAAATATGTAATAAGAAGCTTGTCGACAAAAAAGGCTTAAATCTTCATATTCGTCTTCATACAGGCGAGAATCTTAAAAGATGCAACATTTGCAATCGTGGATTTATAAAAAGTGATCATCTTCGACGACATTTACTTATACATGAGCGATCTGTGAATTGCGAATATTGTGATGAGACATTTGTGACACGTACAGATTATAAAAATCATCTTAAGGAAGAGCATGATGAAGAAACTACCAGTCAAGACATTGATAAAccacaaaaaaatcaaaagccGCGACCAAGTCACATTCATGCAATTTGTAAAATTTgcgataaaaagtttcaacgtATCTCAACACTTCGAACACATTTAAATCATCATTTGATGTCAAATTcctttgatgatgttgatgttaaaaacaaaatatttttgtttaatccATTGGAAGTCGATCTGGAGAAGACAAGTAATCAAGATTTGCATCaatatttgagaaataaattaaatgagaatGATCATgacaaattttatcaaattctaACTCGTGATGGTCACGAAATGTTACTCAGTGATTCAGAAACGGAAGACGAAAATGAGGCAGGTCCACCTGATGATCGAATCGAACTTTCACTCGATCAAAATGCAATTCCAAAGCTATTTTATAATTGTACACAATGTACAAAAACCTTCAATCGAAGCAGAGATTCATTTCATCATATGATAACTGATCACATTCACGAACTCGATAACTTCATTGACAAGTGCATTGTTTGTAATAAATCTTTTCCCAACACTTACACACTTCACAAACATCTCAAATCTCAATGTGAAAACAAatcaaagaagtttaattgcaatcattgcaataaaaagtttatgtgGTTGGATTCCATGGCAAAGCATATGGAACATGAACATCCAGGCACAGAAAAGATCAAAATGTATACGTGTGAGTTATGTGGCAAAGCCTTCTCAAGATCAGAACATCTTGAACGTCACAGAAAAACTCACAATCCTTCggagaagaaatttgaatgtCCTGTTTgtcagaagaaatttaatcgaAAGGATAATTTGAGATCTcatatgaaaattcataaagatAACAGAGATGATGAGGATAAACATCTATGTATTTATTGCGGTAGAGCCTTCAGTAATTCATCGAATTTAATCGTTCATATGCGTCGACATACTGGAGAAAAGCCTTATAAGTGTGACTTATGTGAAAAAgGTTTTCCAAGATCTTCTGATCTTCAATGCCATCGTAGAACTCATACAGGAGAAAAACCGtGTTTGTGTACGATATGCGGTAAAGGTTTTTCAAGATCTAATAAACTTGTTCGACATATGAGAATACATACTGGCGTCCGTCCTTATCAATGTACCTATTGCGATCGAGCTTTTACTCAATCGAATGATTTGACTTTACATATTAGAAGACATACAGGAGAGAAACCtTACGTTTGTGCCGTTTGTGGTGATCGGTTTATTCAAGGCACAGCACTTAAACAGCATCAACGAATGCAAGGACATTTTGAAGGCAGTCAACCAAGTCCTTATTCAAGTATTAGTGTGAACAATCCAAGTCGTTATACAAATTCGAATCTTGTTAATAGAAGATATTGTGTCGATCAAGCTCAACAGCAACAAGGAACGAATCCATTGCCTATTAAACCGGTGATACCAAGAAGAAGAACAGTTAATAATATTGTGACGAGTGGAATTACACAAATGATGCCTTTGCAACAAATGATTCCATCGACTTCATCGATGATGAGTCAGATAACGATGAATCAAGATACGTCCTCTGATGTGATGAGCTTACGATCACCCTCACCTCATCAATCATCAGCTTCACATACGCCGGTATCAACACCAATACCACACAATATTGATATAAAACCAAATATTCAGAACCTGAACCTTCCACAGTACAATGGAACGTTGCCACTTGTGCCCAATTTACCGAATATGGAAATAGCAACGCTCTTTTTTAACCAAGGGCTCCTCCTTTTCATCCGAATTTCTTTTCGACATACTCGTGAAATCGGAATAATTTAG
- Protein Sequence
- MDEISDIKRDFNISRMCRTCLIETEDEMHEIFANSQQDPDALTLNQVLTQFAGNIQLERNDGLPDKLCKDCTEKAYLSYNFKATIEQSDATLRSVLFKENSNHKKESMFDDGSGNYLMGIKTEIAFVDADPFIDDDGDFDDAIDYAENSNTSNQQNDAYNNNSYPQNVAEDLVSPESDGEVSEENPDMKPPKEKTKKNLNQLISPRLVENIDYTKDEEGKYVCQICNKKLVDKKGLNLHIRLHTGENLKRCNICNRGFIKSDHLRRHLLIHERSVNCEYCDETFVTRTDYKNHLKEEHDEETTSQDIDKPQKNQKPRPSHIHAICKICDKKFQRISTLRTHLNHHLMSNSFDDVDVKNKIFLFNPLEVDLEKTSNQDLHQYLRNKLNENDHDKFYQILTRDGHEMLLSDSETEDENEAGPPDDRIELSLDQNAIPKLFYNCTQCTKTFNRSRDSFHHMITDHIHELDNFIDKCIVCNKSFPNTYTLHKHLKSQCENKSKKFNCNHCNKKFMWLDSMAKHMEHEHPGTEKIKMYTCELCGKAFSRSEHLERHRKTHNPSEKKFECPVCQKKFNRKDNLRSHMKIHKDNRDDEDKHLCIYCGRAFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYQCTYCDRAFTQSNDLTLHIRRHTGEKPYVCAVCGDRFIQGTALKQHQRMQGHFEGSQPSPYSSISVNNPSRYTNSNLVNRRYCVDQAQQQQGTNPLPIKPVIPRRRTVNNIVTSGITQMMPLQQMIPSTSSMMSQITMNQDTSSDVMSLRSPSPHQSSASHTPVSTPIPHNIDIKPNIQNLNLPQYNGTLPLVPNLPNMEIATLFFNQGLLLFIRISFRHTREIGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346913; iTF_01353020; iTF_01353011;
- 90% Identity
- iTF_00346913;
- 80% Identity
- iTF_00346913;