Basic Information

Insect: Clunio marinus
Gene Symbol: -
Assembly: GCA_900005825.1
Location: CVRI01000048.1:1039696-1044396[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5e-05 0.0037 17.9 0.3 1 23 221 243 221 243 0.98

2 14 1.5e-05 0.0011 19.5 2.2 2 23 250 271 249 271 0.97

3 14 6.8e-05 0.005 17.4 0.4 3 23 277 298 275 298 0.94

4 14 0.00035 0.026 15.2 3.4 3 23 325 345 324 345 0.97

5 14 0.0062 0.46 11.3 4.5 1 23 439 462 439 462 0.97

6 14 0.0068 0.5 11.2 1.0 2 21 472 491 471 492 0.89

7 14 0.099 7.3 7.5 3.5 1 23 501 524 501 524 0.92

8 14 3.9e-08 2.9e-06 27.6 2.6 1 23 533 555 533 555 0.99

9 14 3e-08 2.2e-06 28.0 1.4 1 23 562 584 562 584 0.98

10 14 1.8e-06 0.00013 22.4 1.2 3 23 596 616 594 616 0.92

11 14 6.4e-05 0.0048 17.5 2.8 1 23 622 644 622 644 0.99

12 14 9.5e-07 7.1e-05 23.3 2.2 3 23 652 672 650 672 0.97

13 14 1.1e-07 7.9e-06 26.3 1.3 1 23 678 700 678 700 0.99

14 14 0.0072 0.54 11.1 0.1 1 23 706 730 706 730 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5e-05	0.0037	17.9	0.3	1	23	221	243	221	243	0.98
2	14	1.5e-05	0.0011	19.5	2.2	2	23	250	271	249	271	0.97
3	14	6.8e-05	0.005	17.4	0.4	3	23	277	298	275	298	0.94
4	14	0.00035	0.026	15.2	3.4	3	23	325	345	324	345	0.97
5	14	0.0062	0.46	11.3	4.5	1	23	439	462	439	462	0.97
6	14	0.0068	0.5	11.2	1.0	2	21	472	491	471	492	0.89
7	14	0.099	7.3	7.5	3.5	1	23	501	524	501	524	0.92
8	14	3.9e-08	2.9e-06	27.6	2.6	1	23	533	555	533	555	0.99
9	14	3e-08	2.2e-06	28.0	1.4	1	23	562	584	562	584	0.98
10	14	1.8e-06	0.00013	22.4	1.2	3	23	596	616	594	616	0.92
11	14	6.4e-05	0.0048	17.5	2.8	1	23	622	644	622	644	0.99
12	14	9.5e-07	7.1e-05	23.3	2.2	3	23	652	672	650	672	0.97
13	14	1.1e-07	7.9e-06	26.3	1.3	1	23	678	700	678	700	0.99
14	14	0.0072	0.54	11.1	0.1	1	23	706	730	706	730	0.93

Sequence Information

Coding Sequence: ATGGATGAAATATCAGACATAAAGCGCGATTTTAATATCAGCAGAATGTGTCGAACATGTTTAATAGAAACAGAAGATGAAATGCATGAGATATTTGCAAATTCACAACAAGATCCAGATGCATTAACACTTAATCAAGTTTTAACGCAATTTGCAGGAAATATTCAGCTCGAGCGTAATGATGGACTTCCTGATAAACTCTGCAAAGACTGCACTGAGAAAGCGTATTTATCTTATAACTTTAAAGCTACGATAGAACAAAGTGATGCGACACTTCGTAGCGTGttgttcaaagaaaattcaaatcataaaaaagaatcgaTGTTTGATGATGGAAGTGGAAATTATCTTATGGGAATCAAAACAGAAATAGCATTTGTCGATGCCGATCCTTTCATTGATGACGATGGTGATTTTGATGATGCAATTGATTATGCTGAAAACTCAAATAcatcaaatcaacaaaatgaTGCATACAACAATAATTCTTATCCACAAAATGTTGCGGAAGATTTGGTTTCACCTGAATCAGATGGCGAAGTTAGTGAAGAGAATCCTGATATGAAGCCAccaaaagagaaaacaaaaaagaatcttaaTCAGCTTATATCACCAAGACTCGTTGAAAACATCGATTACACCAAggatgaagaaggaaaatatgtttgtcAAATATGTAATAAGAAGCTTGTCGACAAAAAAGGCTTAAATCTTCATATTCGTCTTCATACAGGCGAGAATCTTAAAAGATGCAACATTTGCAATCGTGGATTTATAAAAAGTGATCATCTTCGACGACATTTACTTATACATGAGCGATCTGTGAATTGCGAATATTGTGATGAGACATTTGTGACACGTACAGATTATAAAAATCATCTTAAGGAAGAGCATGATGAAGAAACTACCAGTCAAGACATTGATAAAccacaaaaaaatcaaaagccGCGACCAAGTCACATTCATGCAATTTGTAAAATTTgcgataaaaagtttcaacgtATCTCAACACTTCGAACACATTTAAATCATCATTTGATGTCAAATTcctttgatgatgttgatgttaaaaacaaaatatttttgtttaatccATTGGAAGTCGATCTGGAGAAGACAAGTAATCAAGATTTGCATCaatatttgagaaataaattaaatgagaatGATCATgacaaattttatcaaattctaACTCGTGATGGTCACGAAATGTTACTCAGTGATTCAGAAACGGAAGACGAAAATGAGGCAGGTCCACCTGATGATCGAATCGAACTTTCACTCGATCAAAATGCAATTCCAAAGCTATTTTATAATTGTACACAATGTACAAAAACCTTCAATCGAAGCAGAGATTCATTTCATCATATGATAACTGATCACATTCACGAACTCGATAACTTCATTGACAAGTGCATTGTTTGTAATAAATCTTTTCCCAACACTTACACACTTCACAAACATCTCAAATCTCAATGTGAAAACAAatcaaagaagtttaattgcaatcattgcaataaaaagtttatgtgGTTGGATTCCATGGCAAAGCATATGGAACATGAACATCCAGGCACAGAAAAGATCAAAATGTATACGTGTGAGTTATGTGGCAAAGCCTTCTCAAGATCAGAACATCTTGAACGTCACAGAAAAACTCACAATCCTTCggagaagaaatttgaatgtCCTGTTTgtcagaagaaatttaatcgaAAGGATAATTTGAGATCTcatatgaaaattcataaagatAACAGAGATGATGAGGATAAACATCTATGTATTTATTGCGGTAGAGCCTTCAGTAATTCATCGAATTTAATCGTTCATATGCGTCGACATACTGGAGAAAAGCCTTATAAGTGTGACTTATGTGAAAAAgGTTTTCCAAGATCTTCTGATCTTCAATGCCATCGTAGAACTCATACAGGAGAAAAACCGtGTTTGTGTACGATATGCGGTAAAGGTTTTTCAAGATCTAATAAACTTGTTCGACATATGAGAATACATACTGGCGTCCGTCCTTATCAATGTACCTATTGCGATCGAGCTTTTACTCAATCGAATGATTTGACTTTACATATTAGAAGACATACAGGAGAGAAACCtTACGTTTGTGCCGTTTGTGGTGATCGGTTTATTCAAGGCACAGCACTTAAACAGCATCAACGAATGCAAGGACATTTTGAAGGCAGTCAACCAAGTCCTTATTCAAGTATTAGTGTGAACAATCCAAGTCGTTATACAAATTCGAATCTTGTTAATAGAAGATATTGTGTCGATCAAGCTCAACAGCAACAAGGAACGAATCCATTGCCTATTAAACCGGTGATACCAAGAAGAAGAACAGTTAATAATATTGTGACGAGTGGAATTACACAAATGATGCCTTTGCAACAAATGATTCCATCGACTTCATCGATGATGAGTCAGATAACGATGAATCAAGATACGTCCTCTGATGTGATGAGCTTACGATCACCCTCACCTCATCAATCATCAGCTTCACATACGCCGGTATCAACACCAATACCACACAATATTGATATAAAACCAAATATTCAGAACCTGAACCTTCCACAGTACAATGGAACGTTGCCACTTGTGCCCAATTTACCGAATATGGAAATAGCAACGCTCTTTTTTAACCAAGGGCTCCTCCTTTTCATCCGAATTTCTTTTCGACATACTCGTGAAATCGGAATAATTTAG
Protein Sequence: MDEISDIKRDFNISRMCRTCLIETEDEMHEIFANSQQDPDALTLNQVLTQFAGNIQLERNDGLPDKLCKDCTEKAYLSYNFKATIEQSDATLRSVLFKENSNHKKESMFDDGSGNYLMGIKTEIAFVDADPFIDDDGDFDDAIDYAENSNTSNQQNDAYNNNSYPQNVAEDLVSPESDGEVSEENPDMKPPKEKTKKNLNQLISPRLVENIDYTKDEEGKYVCQICNKKLVDKKGLNLHIRLHTGENLKRCNICNRGFIKSDHLRRHLLIHERSVNCEYCDETFVTRTDYKNHLKEEHDEETTSQDIDKPQKNQKPRPSHIHAICKICDKKFQRISTLRTHLNHHLMSNSFDDVDVKNKIFLFNPLEVDLEKTSNQDLHQYLRNKLNENDHDKFYQILTRDGHEMLLSDSETEDENEAGPPDDRIELSLDQNAIPKLFYNCTQCTKTFNRSRDSFHHMITDHIHELDNFIDKCIVCNKSFPNTYTLHKHLKSQCENKSKKFNCNHCNKKFMWLDSMAKHMEHEHPGTEKIKMYTCELCGKAFSRSEHLERHRKTHNPSEKKFECPVCQKKFNRKDNLRSHMKIHKDNRDDEDKHLCIYCGRAFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYQCTYCDRAFTQSNDLTLHIRRHTGEKPYVCAVCGDRFIQGTALKQHQRMQGHFEGSQPSPYSSISVNNPSRYTNSNLVNRRYCVDQAQQQQGTNPLPIKPVIPRRRTVNNIVTSGITQMMPLQQMIPSTSSMMSQITMNQDTSSDVMSLRSPSPHQSSASHTPVSTPIPHNIDIKPNIQNLNLPQYNGTLPLVPNLPNMEIATLFFNQGLLLFIRISFRHTREIGII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00346903;
90% Identity: iTF_00346903;
80% Identity: iTF_00346903;