Basic Information

Insect: Smittia aterrima
Gene Symbol: -
Assembly: GCA_033063855.1
Location: CP093831.1:3471480-3474516[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 1.4 9.0 0.3 13 36 216 236 210 242 0.77

2 12 5.6 7.5e+03 -3.0 8.3 35 39 263 267 237 298 0.55

3 12 0.00019 0.25 11.4 1.2 16 40 320 341 314 343 0.91

4 12 0.17 2.3e+02 1.8 1.0 14 38 434 460 428 463 0.71

5 12 0.48 6.4e+02 0.4 3.1 12 43 464 492 459 493 0.78

6 12 0.025 34 4.5 4.1 10 44 492 523 490 523 0.84

7 12 0.0011 1.5 8.9 0.7 15 30 529 550 524 554 0.74

8 12 0.00022 0.29 11.1 1.2 13 40 556 580 548 592 0.87

9 12 7.9e-06 0.011 15.7 0.9 13 41 588 613 582 615 0.86

10 12 0.53 7.1e+02 0.3 0.3 18 30 621 633 616 643 0.77

11 12 0.0063 8.4 6.5 2.4 18 40 649 668 633 670 0.86

12 12 0.14 1.8e+02 2.2 0.5 18 41 677 697 676 699 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	1.4	9.0	0.3	13	36	216	236	210	242	0.77
2	12	5.6	7.5e+03	-3.0	8.3	35	39	263	267	237	298	0.55
3	12	0.00019	0.25	11.4	1.2	16	40	320	341	314	343	0.91
4	12	0.17	2.3e+02	1.8	1.0	14	38	434	460	428	463	0.71
5	12	0.48	6.4e+02	0.4	3.1	12	43	464	492	459	493	0.78
6	12	0.025	34	4.5	4.1	10	44	492	523	490	523	0.84
7	12	0.0011	1.5	8.9	0.7	15	30	529	550	524	554	0.74
8	12	0.00022	0.29	11.1	1.2	13	40	556	580	548	592	0.87
9	12	7.9e-06	0.011	15.7	0.9	13	41	588	613	582	615	0.86
10	12	0.53	7.1e+02	0.3	0.3	18	30	621	633	616	643	0.77
11	12	0.0063	8.4	6.5	2.4	18	40	649	668	633	670	0.86
12	12	0.14	1.8e+02	2.2	0.5	18	41	677	697	676	699	0.77

Sequence Information

Coding Sequence: ATGGAAGAATTATCGGATATCAAGCGAGACTTTAACATTGGGAAGATGTGTAGGACTTGCTTGCTCGAAACAGACGACGAGATGCACGAGATTTTCCTGAATTCACAACAAGAGGCTGATGCATTAACTTTAAACCAAATTCTACAACAGTTGACGGGGAATGTTCAGATTTCACAAAACGATGGACTTCCCGATAAAATATGCAAGGATTGTACCGATAAAGCATATTTATCGTTCCATTTCAAGGCCAGCATCGAGCAAAGCGATGCAACACTTCGAAGTGTTCTCTTTAAAGATGATTCCCTTGATAATCGAGAGGAGAACAATACGAATTTCATGATGGGAATAAAGACGGAGATTGCATTTGTTGACGCTGATCCATTCATCGATGACGATGGTGACTTTGATGCTTCGATCGACTATGCTGACAACTCGAATACTTCAAATCAGCAAAATGATTCATATAACAACAACTCGTACTCATCACAAGACGGAGCTGACGAAACTGTTGATCCAGAGGAATCAGATGATGATGCaagtgaagagaattttGATATGAAGCCACCAAAggacaaaatgaaaaagaagcCTCACGACGAACACTCACCGACAAGAGTTGTTGAGAACGTTGATTACGTGAAGGATGAAGatggaaagtttgtttgtcaGATCTGTAATAAGAAGTTGGTTGACAAGAAAGGTTTAACTCTTCACGTTCGACTTCATACAGGCGAAAATCTCAAACGATGCAATATATGTAATCGAGGTTTCATTAAGAGTGATCACCTTCGACGACATCTTCTGATCCATGAACGAACAGTCAGTTGTGATTATTGTGATGAAACATTCGTATCACGAACTGAGTACAAGAATCATGTGCGAGAAGAACATGACGAAGAGATAGAAGCTGAGGACGAGAAACCTTTAAAAAATCAACGATCACGATCAATGCAAATTAATGCGTCATGCAAAATTTgcgataaaaagtttcagagGATTTCAACATTACGAACTCATCTTAATCAACATCTTAGCTCGACTTCATTCGACGATATTGAAATTAAgaacaaaatctttcttttcaatccTCTCGAAGTGGATTTAGAAAAGTCGAGTCTCCCACAACTTCATCAGTatttaagaaacaaaatgaacgagaacgaatatgaaaagttttaccaAATTCTATCAAGAGATGGTCACGAGCTTTTGCTAAGCGATTCAGAAAGtgaagatgaaaacgaaGCTGAAGCACCAGATGATCGGATAGAGCTGACACTTGATCAAAACACAATCCCAAAGAAATTCTATAACTGCACATTGTGCTCGAATCTCTTCAAGCGGAGCAGGGAATCGATGGCTCACATGATGACCGATCACATTCATCAactggaaaattttatcgacAAATGCATCACATGCAGCAAATCATTTCCCAACGCCTATACCTTGCATAAGCATCTGAAATCACAGTGCGAGaacaaatcaaagaaattaaattgtaacGTTTGCAATAAGAAGTTCATGTGGCTCGATTCGATGGCGAAGCACATGGAAAACAAACATCCGGGGActgagaaaatcaaaatgtatACGTGTGAGTTATGCGGGAAAGCGTTCTCACGATCTGAGCACCTTGAACGTCATCGGAAAACTCACAATCCATctgaaaagaagtttgagTGTCCGGTGTGccagaaaaagtttaatcgaaAAGATAACTTGCGTTCACATATGAAGATTCATAAAGATAATCGTGACGATGAAGACAAGCACTTGTGCATTTATTGCGGTCGAGCTTTTAGCAACTCATCAAACTTAATTGTTCACATGCGACGTCATACAGgGGAAAAGCCATATAAATGCGATTTATGTGAAAAAGGATTTCCTCGATCATCTGATCTGCAGTGTCATCGAAGAACTCATACTGGTGAGAAGCCATGTCTTTGTACGATTTGTGGAAAAGGCTTTTCTCGATCGAACAAACTCGTCCGACATATGCGAATTCATACGgGAGTTCGGCCTTATCAATGTACATATTGCGATCGAGCGTTCACGCAATCGAATGATTTGACACTTCATATCCGTCGACATACAGgGGAGAAACCTTACGTTTGCGCTGTTTGCGGGGATCGTTTCATACAGGGAACAGCTCTTAAGCAACATCAACGTATGCAAGGGCATTTTGAAGGTAGTCAACCAAGTCCTTATTCAGCCATAAGCGTCAATAATCCGAGCCGTTTCACCAACTCTAATCTTGTGAACCGTCGCTACGGTGTTGACCAACCgcagcagcaacaaacaTCAAATCCTCCTTTGCCTATAAAGCCAGTGATACCGCGTCGACGAACAGTTAATAATGTTTCAGCAAATACAATGAATCAGATGATGCCTAATCAACAAATGGTTCCTTCGACTTCAATGCTGAATCAAGTATCAATGAACCAATCAGATTCGCAGTCTGATGTGATGGGCTTGAGATCACCTTCTCCGCATCAGTCTTCAGCCTCACATACACCTGTAACAACACCAATCCCGCACAATCTCGATATCAAGCCAAATATTCAGAACTTGAATCTACCGCAGTACAACGGCCAGCTTGTGCCAAACATCTCCAACAACATGGAAATATCGACTCTCTTTTTCAGTCAGAACTTCAATCAGCAAACTCacaattaa
Protein Sequence: MEELSDIKRDFNIGKMCRTCLLETDDEMHEIFLNSQQEADALTLNQILQQLTGNVQISQNDGLPDKICKDCTDKAYLSFHFKASIEQSDATLRSVLFKDDSLDNREENNTNFMMGIKTEIAFVDADPFIDDDGDFDASIDYADNSNTSNQQNDSYNNNSYSSQDGADETVDPEESDDDASEENFDMKPPKDKMKKKPHDEHSPTRVVENVDYVKDEDGKFVCQICNKKLVDKKGLTLHVRLHTGENLKRCNICNRGFIKSDHLRRHLLIHERTVSCDYCDETFVSRTEYKNHVREEHDEEIEAEDEKPLKNQRSRSMQINASCKICDKKFQRISTLRTHLNQHLSSTSFDDIEIKNKIFLFNPLEVDLEKSSLPQLHQYLRNKMNENEYEKFYQILSRDGHELLLSDSESEDENEAEAPDDRIELTLDQNTIPKKFYNCTLCSNLFKRSRESMAHMMTDHIHQLENFIDKCITCSKSFPNAYTLHKHLKSQCENKSKKLNCNVCNKKFMWLDSMAKHMENKHPGTEKIKMYTCELCGKAFSRSEHLERHRKTHNPSEKKFECPVCQKKFNRKDNLRSHMKIHKDNRDDEDKHLCIYCGRAFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYQCTYCDRAFTQSNDLTLHIRRHTGEKPYVCAVCGDRFIQGTALKQHQRMQGHFEGSQPSPYSAISVNNPSRFTNSNLVNRRYGVDQPQQQQTSNPPLPIKPVIPRRRTVNNVSANTMNQMMPNQQMVPSTSMLNQVSMNQSDSQSDVMGLRSPSPHQSSASHTPVTTPIPHNLDIKPNIQNLNLPQYNGQLVPNISNNMEISTLFFSQNFNQQTHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00346903;
90% Identity: iTF_01353020;
80% Identity: iTF_01353020;