Cmar007003.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_900005825.1
- Location
- CVRI01000021.1:673320-676237[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-103 3.2e-99 332.2 35.2 1 299 30 315 30 316 0.91 2 2 0.037 7.8e+02 -0.6 3.6 216 245 341 369 319 390 0.50
Sequence Information
- Coding Sequence
- atggaTAGTCCTGGTGCGGGGGGAAGACGAAGAGGAACTACAAAAGTTTCAGCAGAAGATCAAGCTCTTGACCAAATTGCAAAAGATGCAGAAGCCCGTTTAGCAGCGAAACGACAAGCAAGAGCTGAAGCAAGAGAAATTCGTATGCGAGAACTTGACCGACAACAAAAAGAGTTGGAACAAAGTGCTGATCGAGTATACGATATGCAACAATCAGAAGTATTAATAACACCGAGATCGCGAATGATTGGAAACAATCCTTCAGCGATTCGCGGATATTCGATGTCATCAAGACGAAGTAGCGAAGATtcacaagaagaagaaggcaGAAGCTTGAGAGATATTCGACAGGAATTAAAGGATGTTGAAGAAAGATTCCGCAAAGCAATGATAACAAATGCCCAACTTGACAACGATCGTTCCTCACAAACATATCAAATTGATCTACTTAAAGATATCGTAGAAGAGATGGAAGAATCATATGCACAACTGCAGCGTGAGTACCGTGAAAAGAGCCGAGCGCATGATTCACTTAAAAGGCAGAACGATAAATTGACtgaggaaaataaattgttgcaAGGACAACTAAATGAACGAGACACATTAATCGCCAACTATGGTTTAGTGATTTTGTTAGTAGAAAATGACGATGGAAGTGATGCTAAACGCGTTCTAGTCTCGAGTGAAAATGCTCAACTTTTGAGCACTGTTGAAGGATCTATTGATGCTCGACTAAAGACTTTTGCAGATGAGAAACAAGAACTTCAAGCGGAGGTTCAAAAATTAAACCAACAGTTGAACGATATAAAATCACGAGGTGGAAGACGATCAAGTTCACGCAATGGAGTGTTAGATGACGACGATTCCGACGATGCACAGCGTGAGGTAACAAAAGCACTTAATGATTATAAATATCGTTTGCAAAAAGCAGAACAAGAAATTGCAAGTCTTCAGGCAAGCTTAGCACGTTCCGAGACACAAGTTATTCGATACAAAAGTACAGCAGAAGCAGCTGAAAAAGCAGAAGCGGATCTTAAAGTTGAACGTAGAAAACTTCAGCGAGAAAATCGTGAAGCAATGGAACGTCTTGAAGAGCTTGAGACGTCAAATAATCATCTGCTGAAACGATTGGATAAACTGAAAAACGCGAAAAGTGCATTGCTAAAAGATCTTTGA
- Protein Sequence
- MDSPGAGGRRRGTTKVSAEDQALDQIAKDAEARLAAKRQARAEAREIRMRELDRQQKELEQSADRVYDMQQSEVLITPRSRMIGNNPSAIRGYSMSSRRSSEDSQEEEGRSLRDIRQELKDVEERFRKAMITNAQLDNDRSSQTYQIDLLKDIVEEMEESYAQLQREYREKSRAHDSLKRQNDKLTEENKLLQGQLNERDTLIANYGLVILLVENDDGSDAKRVLVSSENAQLLSTVEGSIDARLKTFADEKQELQAEVQKLNQQLNDIKSRGGRRSSSRNGVLDDDDSDDAQREVTKALNDYKYRLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEADLKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249104;
- 90% Identity
- -
- 80% Identity
- -