Calb018162.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01012152.1:1-4231[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.13 1.2e+03 -0.3 0.1 23 43 36 56 32 60 0.84 2 7 0.0025 24 5.2 0.1 20 47 61 88 54 95 0.84 3 7 5.4e-05 0.5 10.6 0.0 21 47 118 144 111 151 0.85 4 7 2.7e-05 0.25 11.5 0.0 20 47 173 200 161 207 0.83 5 7 0.0057 53 4.1 0.5 20 47 229 256 223 267 0.85 6 7 0.002 19 5.5 0.0 23 46 288 311 283 317 0.84 7 7 0.05 4.7e+02 1.1 0.2 21 31 314 324 309 332 0.86
Sequence Information
- Coding Sequence
- ATGGATATTACGAGAAATAAACGGAATAGTTCGACAAACAAGGATGGaggtgaattaaataaaacgctTAAAAATCAAGAACTGAAATTAATTCGCACTCGAGGAAAGCCATTTAAATGCGATATATGTTCCAAATGTTTCGTACAAACTTCgtctttaattaaacataaaagatCGCATACTGGAGAAAAACCGTTTAAATGCGATGTATGTTGTAAAAGATTTAGCAGTTCATCTAGCCTAAAAAACCATATAAAGCTACATACGGGAGAAAGACcgtttaaatgcaatttatgtaataaaagcTACGTCATTTCTTCGCTTCTCAATAGTCATAAAAGGGTGCATACTGGAGAAAAGCCATTTAAATGCAATGTTTGTTTCAAAGGCTTCATGAACTCACGCAATCTCAAAGTTCATAAGAGGATACATGCTGgagaaaaaccatttaaatgtGATACATGTTCCAAATGTTTCATCCATTCTTCGGccttaaatatacataaaagaTCGCATACTGGAGAAAAACCGTTTAAATGCGATGTTTGTTTCAAAGGCTTCATGAACTCACGCAATCTCAAAGTTCATAAGAGGATACATACTGgagaaaaaccatttaaatgtGATACATGTTCCAAATGTTTCATCCATTCTTCGGCCTTAATTATACATAAAAGATCGCATACTGGAGAAAAACCGTTTAAATGCGATGTATGTTGCAGAAGTTTAAGCAGTTCTGCTAGCCTAAATAACCATATAAGGCTACATACGGGAGAAAGGCcgtttaaatgcaatttatgtaataaaagcTTCGTCAATTTTTCACTTCTCAATAGTCATAAAATGGTGCATACTGGAAAAAAGCCATTTGAATGCGATGTTTGTTTCAAAAGCTTGATGACCTCACGCGATCTCAAAATTCATAAGAGAGTGCATACTGGAGAAAAGCCGTATAAATGCGATGTATGTTATAAAGATTATGCCACGATATCTACtttaatttgtcataaaaGAACACATACTGGAGAAAAGCCATTTAAATGCAATGAATGCAACAAATGTTATAGTGCAAAAGTTAGTCTAAAGCAACACAAATTAATTCACAATGAAAAGTCTACTGACTTGAAAGTGACTACCCGCTTGGAGAGCGTAATAGATATAAAGGAGGAAAAGATAGAAGAGAGAAGAGAGGATGAATATCACATTGAAAAGACTACTGACTTGAAAGTGACTACCCGCTTGGAAAGCGTAACAGATATAAAGGACGAAAAGATAGAAGAGAGAAGAGATGATGAATATAACATTGAAAAGTCTACTGACTTGAAAGTGACTACCCGCTTAGAGAGCGTAATAGACATAAAGGAGGAAAAGATAGAGGAGAGAAGAGAGGATGAATATTACATTGATCcatttatagtaattaaaaaagaattagatGAATAG
- Protein Sequence
- MDITRNKRNSSTNKDGGELNKTLKNQELKLIRTRGKPFKCDICSKCFVQTSSLIKHKRSHTGEKPFKCDVCCKRFSSSSSLKNHIKLHTGERPFKCNLCNKSYVISSLLNSHKRVHTGEKPFKCNVCFKGFMNSRNLKVHKRIHAGEKPFKCDTCSKCFIHSSALNIHKRSHTGEKPFKCDVCFKGFMNSRNLKVHKRIHTGEKPFKCDTCSKCFIHSSALIIHKRSHTGEKPFKCDVCCRSLSSSASLNNHIRLHTGERPFKCNLCNKSFVNFSLLNSHKMVHTGKKPFECDVCFKSLMTSRDLKIHKRVHTGEKPYKCDVCYKDYATISTLICHKRTHTGEKPFKCNECNKCYSAKVSLKQHKLIHNEKSTDLKVTTRLESVIDIKEEKIEERREDEYHIEKTTDLKVTTRLESVTDIKDEKIEERRDDEYNIEKSTDLKVTTRLESVIDIKEEKIEERREDEYYIDPFIVIKKELDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00345264;
- 90% Identity
- iTF_00345264;
- 80% Identity
- iTF_00345264;