Calb018162.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clogmia albipunctata
Gene Symbol
-
Assembly
GCA_001014945.1
Location
JXOV01012152.1:1-4231[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2e-06 0.00016 21.9 4.3 1 23 38 60 38 60 0.99
2 12 4.2e-05 0.0034 17.8 4.5 1 23 66 88 66 88 0.98
3 12 1.3e-05 0.0011 19.4 1.2 1 23 94 116 94 116 0.99
4 12 8.1e-06 0.00066 20.0 2.1 1 23 122 144 122 144 0.99
5 12 1.4e-05 0.0012 19.3 5.8 1 23 150 172 150 172 0.99
6 12 9.1e-06 0.00074 19.9 1.7 1 23 178 200 178 200 0.99
7 12 1.4e-05 0.0011 19.3 5.0 1 23 206 228 206 228 0.99
8 12 0.00061 0.05 14.1 1.7 1 23 234 256 234 256 0.98
9 12 3e-06 0.00024 21.4 1.8 1 23 262 284 262 284 0.98
10 12 0.0002 0.017 15.6 0.8 1 23 290 312 290 312 0.98
11 12 0.012 1 10.0 2.7 1 23 318 340 318 340 0.99
12 12 5.8e-05 0.0047 17.3 3.6 1 23 346 368 346 368 0.98

Sequence Information

Coding Sequence
ATGGATATTACGAGAAATAAACGGAATAGTTCGACAAACAAGGATGGaggtgaattaaataaaacgctTAAAAATCAAGAACTGAAATTAATTCGCACTCGAGGAAAGCCATTTAAATGCGATATATGTTCCAAATGTTTCGTACAAACTTCgtctttaattaaacataaaagatCGCATACTGGAGAAAAACCGTTTAAATGCGATGTATGTTGTAAAAGATTTAGCAGTTCATCTAGCCTAAAAAACCATATAAAGCTACATACGGGAGAAAGACcgtttaaatgcaatttatgtaataaaagcTACGTCATTTCTTCGCTTCTCAATAGTCATAAAAGGGTGCATACTGGAGAAAAGCCATTTAAATGCAATGTTTGTTTCAAAGGCTTCATGAACTCACGCAATCTCAAAGTTCATAAGAGGATACATGCTGgagaaaaaccatttaaatgtGATACATGTTCCAAATGTTTCATCCATTCTTCGGccttaaatatacataaaagaTCGCATACTGGAGAAAAACCGTTTAAATGCGATGTTTGTTTCAAAGGCTTCATGAACTCACGCAATCTCAAAGTTCATAAGAGGATACATACTGgagaaaaaccatttaaatgtGATACATGTTCCAAATGTTTCATCCATTCTTCGGCCTTAATTATACATAAAAGATCGCATACTGGAGAAAAACCGTTTAAATGCGATGTATGTTGCAGAAGTTTAAGCAGTTCTGCTAGCCTAAATAACCATATAAGGCTACATACGGGAGAAAGGCcgtttaaatgcaatttatgtaataaaagcTTCGTCAATTTTTCACTTCTCAATAGTCATAAAATGGTGCATACTGGAAAAAAGCCATTTGAATGCGATGTTTGTTTCAAAAGCTTGATGACCTCACGCGATCTCAAAATTCATAAGAGAGTGCATACTGGAGAAAAGCCGTATAAATGCGATGTATGTTATAAAGATTATGCCACGATATCTACtttaatttgtcataaaaGAACACATACTGGAGAAAAGCCATTTAAATGCAATGAATGCAACAAATGTTATAGTGCAAAAGTTAGTCTAAAGCAACACAAATTAATTCACAATGAAAAGTCTACTGACTTGAAAGTGACTACCCGCTTGGAGAGCGTAATAGATATAAAGGAGGAAAAGATAGAAGAGAGAAGAGAGGATGAATATCACATTGAAAAGACTACTGACTTGAAAGTGACTACCCGCTTGGAAAGCGTAACAGATATAAAGGACGAAAAGATAGAAGAGAGAAGAGATGATGAATATAACATTGAAAAGTCTACTGACTTGAAAGTGACTACCCGCTTAGAGAGCGTAATAGACATAAAGGAGGAAAAGATAGAGGAGAGAAGAGAGGATGAATATTACATTGATCcatttatagtaattaaaaaagaattagatGAATAG
Protein Sequence
MDITRNKRNSSTNKDGGELNKTLKNQELKLIRTRGKPFKCDICSKCFVQTSSLIKHKRSHTGEKPFKCDVCCKRFSSSSSLKNHIKLHTGERPFKCNLCNKSYVISSLLNSHKRVHTGEKPFKCNVCFKGFMNSRNLKVHKRIHAGEKPFKCDTCSKCFIHSSALNIHKRSHTGEKPFKCDVCFKGFMNSRNLKVHKRIHTGEKPFKCDTCSKCFIHSSALIIHKRSHTGEKPFKCDVCCRSLSSSASLNNHIRLHTGERPFKCNLCNKSFVNFSLLNSHKMVHTGKKPFECDVCFKSLMTSRDLKIHKRVHTGEKPYKCDVCYKDYATISTLICHKRTHTGEKPFKCNECNKCYSAKVSLKQHKLIHNEKSTDLKVTTRLESVIDIKEEKIEERREDEYHIEKTTDLKVTTRLESVTDIKDEKIEERRDDEYNIEKSTDLKVTTRLESVIDIKEEKIEERREDEYYIDPFIVIKKELDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00345485;
90% Identity
iTF_00345485;
80% Identity
iTF_00345485;