Basic Information

Insect: Cloeon dipterum
Gene Symbol: -
Assembly: GCA_949628265.1
Location: OX451263.1:29217284-29267071[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0016 5.1 7.4 0.0 20 45 487 512 479 521 0.87

2 11 0.97 3e+03 -1.5 0.0 26 53 521 548 514 549 0.78

3 11 0.081 2.5e+02 1.9 0.1 20 46 550 576 532 584 0.82

4 11 0.048 1.5e+02 2.7 0.0 21 45 606 630 590 636 0.89

5 11 0.007 22 5.3 0.1 23 53 636 666 631 667 0.87

6 11 0.0013 4.1 7.7 0.1 22 46 670 694 666 703 0.88

7 11 0.79 2.5e+03 -1.2 0.1 27 45 703 721 697 727 0.75

8 11 0.00058 1.8 8.8 0.1 22 53 726 757 722 758 0.89

9 11 0.22 6.9e+02 0.5 0.0 21 43 760 782 758 786 0.89

10 11 0.00058 1.8 8.8 0.3 21 53 788 820 780 821 0.80

11 11 0.0045 14 6.0 0.4 22 51 852 880 843 882 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0016	5.1	7.4	0.0	20	45	487	512	479	521	0.87
2	11	0.97	3e+03	-1.5	0.0	26	53	521	548	514	549	0.78
3	11	0.081	2.5e+02	1.9	0.1	20	46	550	576	532	584	0.82
4	11	0.048	1.5e+02	2.7	0.0	21	45	606	630	590	636	0.89
5	11	0.007	22	5.3	0.1	23	53	636	666	631	667	0.87
6	11	0.0013	4.1	7.7	0.1	22	46	670	694	666	703	0.88
7	11	0.79	2.5e+03	-1.2	0.1	27	45	703	721	697	727	0.75
8	11	0.00058	1.8	8.8	0.1	22	53	726	757	722	758	0.89
9	11	0.22	6.9e+02	0.5	0.0	21	43	760	782	758	786	0.89
10	11	0.00058	1.8	8.8	0.3	21	53	788	820	780	821	0.80
11	11	0.0045	14	6.0	0.4	22	51	852	880	843	882	0.85

Sequence Information

Coding Sequence: atggaGCGTGGAAAAGAAAACGCCACGAAGCTGTGCCAGGTGGACGGAACGTGGGCGAATTACAGCAACTACACCCTGTGCCGTGACCTTTCGACCCCGCCACCAATAGAGGCCAGCGTCGAGGTCACCACCAGCATTTACTACGCCGGATACACGCTCTCCCTCGCCGCCCTTGGCGCCGCCGTCGCTATTTTCCTCTATTTCAAGGATTTGCGATGCCTGCGCAACACGATCCACACGAATCTGATGCTGAGCTACATCCTAGCCGATTTCATGTGGATCCTGACCATCACCATGCAGATGTCCCTGCAGTCGGAGCCGGCGTCGTGCGTGGCCTTGGTCATCCTGCTGCACTACTGCCAACTGACCAACTTCTTCTGGATGTTTGTCGAAGGGCTGTACTTACACGTTTTGGTGGTGGAAACTTTCACGGTGGAGAACATCAGACTGCGCGTTTACGTCTGCATCGGATGGGGCACCCCGATGCTGATAGTCCTGATTTGGGCTCTAGTCAAGACATTCGCCACGACGTCGCCGTCCGACATGCAGGGCGGCGCCGCGGGCCCGATGGTGGACATCGTGCAGCACTGTCCGTGGATGGCGCCGCACAACTACGACTGGATCTACCAGGGACCCGCCGTCGCCGTCCTCTGCGTCAACGTCATCTTTTTGTCCATGATCATGTGGGTGCTGATCACGAAACTGCGCTCGGCCAACTCTGTGGAGACGCAGCAGTACCGCAAAGCGACCAAGGCGCTGGTGGTGCTCATCCCGCTGCTCGGAGTCACTTACATCCTCATGATCGCCGGACCCAGCGAGGGGCTCTCGGCCGCCATCTACGCCTACGTCAGGGCCATCATGCTCTCCACCCAGgGCTTCACCGTGTCCCTGTTCTACTGCTTCCTGAACACGGAGGTGCAGAACACCCTGAGGCACCACTGGCAGCGCTGGCAGACGGCCAGGTCGATCAACGGCACAGGAGCCGCTCGGAGGTACTTCAGCAAAGATTGGTCCCCAAAGTCCCGCACGGAAAGCATCCGTCTGTACCACCAGCCGACCAGCGGGCGCGGCAGCCGCTACCACAAGAGGGAGAGCTGTGCCAGCGACGTCACCATGACCACCTTCGTCTGCAACCTCAACAACGGACAGCCAGGACAGTTGCGCGTCTCGCCAGGGACGGCCACCAATGGGAGCAATCCGGCATCCTCCAACGCATTGCTAAACTCACTTCAGGGAGGCGAGAGCTCATCTGCTGCTCCTGAGGCTGTGGAAGAGGCTTATGTTACCTATTGTGGCCAAATTGTGTTCCGTTGCCCAGAGTGCAACCTGAGATTCATATACAAAAGTATGTTTGAAGAACATCGTCTCCTTCATCGTAAAATCAAGACGTTTATCTGTGAAATTTGCACCGTTGGTTTTGATTTCGAATATGAGTTGAACAAACACAAGATTGTCCATAAGACTGAGCGACCGTTCGTCTGTCCGGTGTGCGAAAAGGGATTTAAGCGCAGGGACACCCTGAATCGGCACTTAGTCTTTCACTCAGGAGAGAAGAAGCACATCTGTCAAGAATGCGGTATTGGCTTTTACCAAAAATGCGATATGCTCCGACACATAAGCACCAAGCACCCCACCAAGAATGGTGACACACCTGAGCGGCCGTTTAACTGTTCGGTGTGCAAAAAGGGATTTAAGCGCAAGGACACCCTGAAGCAGCACTTAGTCATTCACTCAGGTGTGAAGAAGCACGTCTGTCCTGAATGTGGCAAGGCCTTCAACCACAAAGGAAGCATGAACCAACATAATGTCCACAACCCTGAGCAACCATTCGTCAGTTCGATATGCAATACGGGATTTAAGCGCAGTAGCGACCTGAATTGGCACTTAGTTGTTCACTCAGGAGAGAAGAATTACATCTGTCAAGAATGCAGCGAGACTTTCAAACGAAAAGATAACTTGCGCGAACACATAAGAACCCAGCACCTCACCAAGAATGGCGACACACCTGAGCGGCCGTTCACTTGTCCGGTGTGCAAGGAGGGATTTATCTGCAAGAAAAACCTGAACCAGCACATTGCCATCCACACAGATGTCAAGAAACACGCCTGTACAGAATGCAGTAAAGCCTTCAATCGAAAATTCTCCTTGCGCCGACACTTGCTCGTTCACTCACAAGAGAAGAACCACGATTGTCCAGAGTGCGGAAAGGCCTTCAACCATAAAAGCGACATGCGCCGACACTTAAGCGAAAAGCACCCCGCCAAGAATGGCGACAAACCTGAGCGGCCTTTTAGCTGTTCGCTGTGCCTGAAGAGCTTTAAGCGCAAGGACAACCTGGACCAGCACTCAGTCAGTCACTCAGGTGAGAAGAAGCACGCCTGTCCAGTATGCGGCAAGGGCTTTATCCGAAATTTCCACATGCGCCGACACATAAGCAACCAGCACCCCGCCAAGAATGGCGACGAACCTGAGCGGCCGTTTAACTGTTCGCTGTGCCCGAAGAGCTTTAAGTCCAAGGGCTCTCTGGTCCAGCACTCTGTCACTCACTCAGGTGAGAAGAAGCACGTCTGTCCAGAATGTGGCAAGGCCTTCAAACGAAATCAAAGCATGCGCCGACACTTAAGAACCCACATCGCCAAGAGAAAGTCGGAAATGAAGAGTGCAGCAAACTCAACGCAATAG
Protein Sequence: MERGKENATKLCQVDGTWANYSNYTLCRDLSTPPPIEASVEVTTSIYYAGYTLSLAALGAAVAIFLYFKDLRCLRNTIHTNLMLSYILADFMWILTITMQMSLQSEPASCVALVILLHYCQLTNFFWMFVEGLYLHVLVVETFTVENIRLRVYVCIGWGTPMLIVLIWALVKTFATTSPSDMQGGAAGPMVDIVQHCPWMAPHNYDWIYQGPAVAVLCVNVIFLSMIMWVLITKLRSANSVETQQYRKATKALVVLIPLLGVTYILMIAGPSEGLSAAIYAYVRAIMLSTQGFTVSLFYCFLNTEVQNTLRHHWQRWQTARSINGTGAARRYFSKDWSPKSRTESIRLYHQPTSGRGSRYHKRESCASDVTMTTFVCNLNNGQPGQLRVSPGTATNGSNPASSNALLNSLQGGESSSAAPEAVEEAYVTYCGQIVFRCPECNLRFIYKSMFEEHRLLHRKIKTFICEICTVGFDFEYELNKHKIVHKTERPFVCPVCEKGFKRRDTLNRHLVFHSGEKKHICQECGIGFYQKCDMLRHISTKHPTKNGDTPERPFNCSVCKKGFKRKDTLKQHLVIHSGVKKHVCPECGKAFNHKGSMNQHNVHNPEQPFVSSICNTGFKRSSDLNWHLVVHSGEKNYICQECSETFKRKDNLREHIRTQHLTKNGDTPERPFTCPVCKEGFICKKNLNQHIAIHTDVKKHACTECSKAFNRKFSLRRHLLVHSQEKNHDCPECGKAFNHKSDMRRHLSEKHPAKNGDKPERPFSCSLCLKSFKRKDNLDQHSVSHSGEKKHACPVCGKGFIRNFHMRRHISNQHPAKNGDEPERPFNCSLCPKSFKSKGSLVQHSVTHSGEKKHVCPECGKAFKRNQSMRRHLRTHIAKRKSEMKSAANSTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00344523;
90% Identity: iTF_00344523;
80% Identity: iTF_00344523;