Cdip016954.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:29217284-29267071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00013 0.0095 16.4 0.9 1 23 436 458 436 458 0.97 2 15 0.0036 0.26 11.9 0.1 1 23 464 486 464 486 0.97 3 15 3.8e-06 0.00027 21.2 0.5 1 23 492 514 492 514 0.94 4 15 0.0018 0.13 12.9 2.9 1 23 520 543 520 543 0.96 5 15 1e-05 0.00072 19.9 1.5 1 23 555 577 555 577 0.96 6 15 0.00013 0.009 16.5 0.7 1 19 583 601 583 602 0.96 7 15 0.0013 0.094 13.3 0.1 5 23 614 632 613 632 0.94 8 15 1.5e-07 1e-05 25.7 1.2 1 23 638 661 638 661 0.98 9 15 0.00079 0.057 14.0 0.8 1 23 673 695 673 695 0.98 10 15 1.1e-05 0.00076 19.9 2.5 1 23 701 723 701 723 0.96 11 15 5.8e-06 0.00041 20.7 2.7 1 23 729 752 729 752 0.92 12 15 0.00029 0.021 15.3 1.7 1 23 764 786 764 786 0.93 13 15 2.5e-05 0.0018 18.7 2.2 1 23 792 815 792 815 0.94 14 15 4.1e-05 0.003 18.0 0.8 1 23 827 849 827 849 0.95 15 15 8.1e-08 5.8e-06 26.5 2.2 1 23 855 877 855 877 0.98
Sequence Information
- Coding Sequence
- atggaGCGTGGAAAAGAAAACGCCACGAAGCTGTGCCAGGTGGACGGAACGTGGGCGAATTACAGCAACTACACCCTGTGCCGTGACCTTTCGACCCCGCCACCAATAGAGGCCAGCGTCGAGGTCACCACCAGCATTTACTACGCCGGATACACGCTCTCCCTCGCCGCCCTTGGCGCCGCCGTCGCTATTTTCCTCTATTTCAAGGATTTGCGATGCCTGCGCAACACGATCCACACGAATCTGATGCTGAGCTACATCCTAGCCGATTTCATGTGGATCCTGACCATCACCATGCAGATGTCCCTGCAGTCGGAGCCGGCGTCGTGCGTGGCCTTGGTCATCCTGCTGCACTACTGCCAACTGACCAACTTCTTCTGGATGTTTGTCGAAGGGCTGTACTTACACGTTTTGGTGGTGGAAACTTTCACGGTGGAGAACATCAGACTGCGCGTTTACGTCTGCATCGGATGGGGCACCCCGATGCTGATAGTCCTGATTTGGGCTCTAGTCAAGACATTCGCCACGACGTCGCCGTCCGACATGCAGGGCGGCGCCGCGGGCCCGATGGTGGACATCGTGCAGCACTGTCCGTGGATGGCGCCGCACAACTACGACTGGATCTACCAGGGACCCGCCGTCGCCGTCCTCTGCGTCAACGTCATCTTTTTGTCCATGATCATGTGGGTGCTGATCACGAAACTGCGCTCGGCCAACTCTGTGGAGACGCAGCAGTACCGCAAAGCGACCAAGGCGCTGGTGGTGCTCATCCCGCTGCTCGGAGTCACTTACATCCTCATGATCGCCGGACCCAGCGAGGGGCTCTCGGCCGCCATCTACGCCTACGTCAGGGCCATCATGCTCTCCACCCAGgGCTTCACCGTGTCCCTGTTCTACTGCTTCCTGAACACGGAGGTGCAGAACACCCTGAGGCACCACTGGCAGCGCTGGCAGACGGCCAGGTCGATCAACGGCACAGGAGCCGCTCGGAGGTACTTCAGCAAAGATTGGTCCCCAAAGTCCCGCACGGAAAGCATCCGTCTGTACCACCAGCCGACCAGCGGGCGCGGCAGCCGCTACCACAAGAGGGAGAGCTGTGCCAGCGACGTCACCATGACCACCTTCGTCTGCAACCTCAACAACGGACAGCCAGGACAGTTGCGCGTCTCGCCAGGGACGGCCACCAATGGGAGCAATCCGGCATCCTCCAACGCATTGCTAAACTCACTTCAGGGAGGCGAGAGCTCATCTGCTGCTCCTGAGGCTGTGGAAGAGGCTTATGTTACCTATTGTGGCCAAATTGTGTTCCGTTGCCCAGAGTGCAACCTGAGATTCATATACAAAAGTATGTTTGAAGAACATCGTCTCCTTCATCGTAAAATCAAGACGTTTATCTGTGAAATTTGCACCGTTGGTTTTGATTTCGAATATGAGTTGAACAAACACAAGATTGTCCATAAGACTGAGCGACCGTTCGTCTGTCCGGTGTGCGAAAAGGGATTTAAGCGCAGGGACACCCTGAATCGGCACTTAGTCTTTCACTCAGGAGAGAAGAAGCACATCTGTCAAGAATGCGGTATTGGCTTTTACCAAAAATGCGATATGCTCCGACACATAAGCACCAAGCACCCCACCAAGAATGGTGACACACCTGAGCGGCCGTTTAACTGTTCGGTGTGCAAAAAGGGATTTAAGCGCAAGGACACCCTGAAGCAGCACTTAGTCATTCACTCAGGTGTGAAGAAGCACGTCTGTCCTGAATGTGGCAAGGCCTTCAACCACAAAGGAAGCATGAACCAACATAATGTCCACAACCCTGAGCAACCATTCGTCAGTTCGATATGCAATACGGGATTTAAGCGCAGTAGCGACCTGAATTGGCACTTAGTTGTTCACTCAGGAGAGAAGAATTACATCTGTCAAGAATGCAGCGAGACTTTCAAACGAAAAGATAACTTGCGCGAACACATAAGAACCCAGCACCTCACCAAGAATGGCGACACACCTGAGCGGCCGTTCACTTGTCCGGTGTGCAAGGAGGGATTTATCTGCAAGAAAAACCTGAACCAGCACATTGCCATCCACACAGATGTCAAGAAACACGCCTGTACAGAATGCAGTAAAGCCTTCAATCGAAAATTCTCCTTGCGCCGACACTTGCTCGTTCACTCACAAGAGAAGAACCACGATTGTCCAGAGTGCGGAAAGGCCTTCAACCATAAAAGCGACATGCGCCGACACTTAAGCGAAAAGCACCCCGCCAAGAATGGCGACAAACCTGAGCGGCCTTTTAGCTGTTCGCTGTGCCTGAAGAGCTTTAAGCGCAAGGACAACCTGGACCAGCACTCAGTCAGTCACTCAGGTGAGAAGAAGCACGCCTGTCCAGTATGCGGCAAGGGCTTTATCCGAAATTTCCACATGCGCCGACACATAAGCAACCAGCACCCCGCCAAGAATGGCGACGAACCTGAGCGGCCGTTTAACTGTTCGCTGTGCCCGAAGAGCTTTAAGTCCAAGGGCTCTCTGGTCCAGCACTCTGTCACTCACTCAGGTGAGAAGAAGCACGTCTGTCCAGAATGTGGCAAGGCCTTCAAACGAAATCAAAGCATGCGCCGACACTTAAGAACCCACATCGCCAAGAGAAAGTCGGAAATGAAGAGTGCAGCAAACTCAACGCAATAG
- Protein Sequence
- MERGKENATKLCQVDGTWANYSNYTLCRDLSTPPPIEASVEVTTSIYYAGYTLSLAALGAAVAIFLYFKDLRCLRNTIHTNLMLSYILADFMWILTITMQMSLQSEPASCVALVILLHYCQLTNFFWMFVEGLYLHVLVVETFTVENIRLRVYVCIGWGTPMLIVLIWALVKTFATTSPSDMQGGAAGPMVDIVQHCPWMAPHNYDWIYQGPAVAVLCVNVIFLSMIMWVLITKLRSANSVETQQYRKATKALVVLIPLLGVTYILMIAGPSEGLSAAIYAYVRAIMLSTQGFTVSLFYCFLNTEVQNTLRHHWQRWQTARSINGTGAARRYFSKDWSPKSRTESIRLYHQPTSGRGSRYHKRESCASDVTMTTFVCNLNNGQPGQLRVSPGTATNGSNPASSNALLNSLQGGESSSAAPEAVEEAYVTYCGQIVFRCPECNLRFIYKSMFEEHRLLHRKIKTFICEICTVGFDFEYELNKHKIVHKTERPFVCPVCEKGFKRRDTLNRHLVFHSGEKKHICQECGIGFYQKCDMLRHISTKHPTKNGDTPERPFNCSVCKKGFKRKDTLKQHLVIHSGVKKHVCPECGKAFNHKGSMNQHNVHNPEQPFVSSICNTGFKRSSDLNWHLVVHSGEKNYICQECSETFKRKDNLREHIRTQHLTKNGDTPERPFTCPVCKEGFICKKNLNQHIAIHTDVKKHACTECSKAFNRKFSLRRHLLVHSQEKNHDCPECGKAFNHKSDMRRHLSEKHPAKNGDKPERPFSCSLCLKSFKRKDNLDQHSVSHSGEKKHACPVCGKGFIRNFHMRRHISNQHPAKNGDEPERPFNCSLCPKSFKSKGSLVQHSVTHSGEKKHVCPECGKAFKRNQSMRRHLRTHIAKRKSEMKSAANSTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00344772;
- 90% Identity
- iTF_00344772;
- 80% Identity
- iTF_00344772;