Cdip010032.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949628265.1
- Location
- OX451261.1:26977726-26981280[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-98 2.1e-94 316.3 34.5 1 300 100 418 100 418 0.87 2 2 0.0026 48 3.1 5.9 121 173 417 469 416 476 0.93
Sequence Information
- Coding Sequence
- ATGGATGTGGAGTGTTCGGCCGCCGACGAGTTCGGCGGCTCGGTAGTGAGCTCGGACGCAGGCAGCGACACGGGCATGGAGTGGACGGACGCGAGGGAAAGCCTCACCCACGGTAGCGTTTCGCCGGTCGATCCCCTAAGCAGCGAGTACGAGGAGGTGTTCAGCGACAGGCCAGACAAGCCAGACAGCCCCCTGTGCAATGGCAACGACGCCGACCAAGACCAGCAGCCCCTTGAGCAGCAGcaagacgacgacgacaatTTTGTGGTCGATAGTCTCGGCAAAATCGCCACTGAAGCCGAAGCCAGGCTAGCTGCAAGGCGGCAGGCGAGGGCTGAAGCGCGAGAAATCCGAATACGGGAGCTGGAAAGACAGCAAAAGGAGTCGGAGCAGCCCCCAGACAATGTGCTTTCGCCAGCCGAAACCAAGCAGCAAAAGCTAGAAACACCTGTGCGGTCGCGGGTCGCCGTCAACAGTCCAAGGAATCTTTTGTCCGCCCAGCCATCAAATTACCAGTCAAGCAGACGGTCCTCGGAAGACTCAATGGAGGACGGAGGGGTTAATTTAAGGGACATGAGGCAAGAGATGAAGGATTTGGacgaaaagtttaaaaaagcgATGTTCCACAATGCTCAATTGGACAACGAAAAGGCTTCTTTTGCATATCAAGTGGAACTGCTGAAAGATCAGATCGAACAGTTAGAAGAGTCGCATTTTCTTTTACAAAAAGAACATAGGGACAAATGTAAAGAATACAGCCAACTAAAACGGGAGTCGGATAAAGTGATTGAAGAGAGGGACATGTATAAATCTCTGTTAGAAGAACGAGATAGGTTAATACAGGAGGCTGGTCTAGTCATTGTTGGTGAGGACATTGCGTCAAGCGAAGAGGAAGACAGCGATGAGGATGAAGACAGCGAAAGCACGCAAAGCAAGAAGAGCCCCTCTCCTCCAAAGCAAAGAAAAGCCCTTGTATCGGCCGACAACGCTCAGCTGCTGGACTCGGCGGGCCAAGGTTCCCTTGACGTGCGGTTGCGCAAGTTTAAGGAGGAGAGAGATGAATTGCAGGACCAGGTGCGGCATCTCAAGCTGGAGCTTGAGGAAGAACGGAACCGCAGCCTCAAGGGCTCTGTTGGATCCTCTTTCAGCATGAACGGACCTAATGATGATGAAATGGACTTGAACCGAGAAGCCTCAAAGCAACTGGGTGATTACAAATTCAAGCTGCAAAAGGCTGAACAAGATATATCAACGCTGCAAGCCAATGTTGCTCGTCTTGAAAGCCAAGTGCTGCGCTACAAGACTGCTGCTGAATCGTCCGAAAAAGCCGAGGAAGAGCTGAAAACAGAGAAGCGCAAACTGCAGCGAGAGCTTCGGGAGGCGCAAGTACGGGTAGAAGAGCTAGACACTCAGAACACTCATTTGGTGCGAAGACTAGACAAGCTCAAGAATGCAAAGTCGGCGCTGCTGAAGGACCTCTGA
- Protein Sequence
- MDVECSAADEFGGSVVSSDAGSDTGMEWTDARESLTHGSVSPVDPLSSEYEEVFSDRPDKPDSPLCNGNDADQDQQPLEQQQDDDDNFVVDSLGKIATEAEARLAARRQARAEAREIRIRELERQQKESEQPPDNVLSPAETKQQKLETPVRSRVAVNSPRNLLSAQPSNYQSSRRSSEDSMEDGGVNLRDMRQEMKDLDEKFKKAMFHNAQLDNEKASFAYQVELLKDQIEQLEESHFLLQKEHRDKCKEYSQLKRESDKVIEERDMYKSLLEERDRLIQEAGLVIVGEDIASSEEEDSDEDEDSESTQSKKSPSPPKQRKALVSADNAQLLDSAGQGSLDVRLRKFKEERDELQDQVRHLKLELEEERNRSLKGSVGSSFSMNGPNDDEMDLNREASKQLGDYKFKLQKAEQDISTLQANVARLESQVLRYKTAAESSEKAEEELKTEKRKLQRELREAQVRVEELDTQNTHLVRRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046263;
- 90% Identity
- -
- 80% Identity
- -