Cbil018681.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- -
- Assembly
- GCA_036417725.1
- Location
- CM071158.1:20251136-20254890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.016 1.1 10.4 0.2 1 21 70 90 70 91 0.95 2 19 1.4 97 4.3 0.1 2 23 119 140 118 140 0.92 3 19 0.0037 0.25 12.4 0.5 2 23 162 183 161 183 0.97 4 19 0.014 0.95 10.6 0.1 1 23 187 209 187 209 0.92 5 19 0.0093 0.64 11.1 0.4 1 23 214 237 214 237 0.90 6 19 0.0027 0.18 12.8 1.0 1 23 243 266 243 266 0.97 7 19 0.0027 0.18 12.8 0.9 1 23 273 296 273 296 0.95 8 19 0.19 13 7.0 0.0 2 23 425 446 424 446 0.96 9 19 4 2.7e+02 2.9 5.1 1 23 468 490 468 490 0.97 10 19 9.4e-06 0.00064 20.6 1.1 1 23 494 516 494 516 0.98 11 19 0.0055 0.37 11.9 0.4 1 21 550 570 550 573 0.90 12 19 0.014 0.96 10.6 0.3 1 13 580 592 580 594 0.90 13 19 1.3 86 4.4 0.1 1 23 642 664 642 664 0.94 14 19 0.12 8 7.7 0.1 2 23 690 712 689 712 0.92 15 19 0.0068 0.46 11.6 0.4 1 23 734 756 734 756 0.99 16 19 0.00041 0.028 15.4 4.1 1 23 760 782 760 782 0.97 17 19 0.45 31 5.8 0.1 1 21 787 807 787 810 0.82 18 19 0.1 6.9 7.9 1.2 1 23 816 839 816 839 0.93 19 19 0.15 10 7.4 0.0 1 23 845 868 845 868 0.95
Sequence Information
- Coding Sequence
- ATGAGAATTGATGAACCTTTTCTATTTTTAGGCGAACGCCGTTTAACAACAGATGAGAATGTTAAAGTCGAGACAAATATTGCACCATTGAAAAAAGAGAAATACAAAAGGAGCGCACGTGCTGAAGCTAGAATAATCACCAAAAAAAACGCCGCAGCAATATTGGAGTGTTGGACGATGTGTCCATTCAGGTGGAAAAAGAACAGATTCAAATGTGCATATTGCGAGGATAATTTCATTGATTCCGATTCATTAAGAACACACGTAAAACTGTGCTCGAAACAGCACACAATCAAAGATATTTACACCAAGTTCAAAGAGATGCCGTTAATCAATATAGATGTCGTTGGAAGTGTGTGCGTGTTCTGTTCCGTCCCTTTCACTGATGTAAAGCAAATGCGAGACCACGTCGTCCAACACGGGTTTGAGTTCAACTGCAGCCATCCTGACGGAGTACTTCCtttctatttaaataaagaatggAAATGTGTTATATGCGAGAAGCAGTTTAACAACTTTTTGAAGCTTTATGAGCACATGAACGTACACTACCAGCACTACATATGTGCCATATGTGGAAAAGGTTATATGACAGCTCCAAGATTAAGAAAGCATTCTGAAGGTCACATAAGTGGTTCTTTCCCTTGTAATGAGTGTGGAAAACAGTTTACTATGAGAGTGTCGAGAGACTCGCACAAGGCGACGGTGCATGCGAAAGAACCGCGGTATGAATGTCCCCACTGCAATATCAGATTTAAAGGATATTACGAAAGAATGGATCACCTTAAAGTGGCTCACAGACAGACCGAGGTGTCTTATCGCTGTGTTCACTGTGATCTATCTTTTAAAACGAGCGGAAAACGAGCGGCCCACGTGTCATCGGTACACTTTCCACACGAGTATGACTTCGATTgttCCGCCGCCGAGGCGGAGTTAGGCATTAAACGAGGTAGGAAGTTAAAGGAAGTAGTAACAGCGCGGCAGATGCGCAGGCGACGGCGGGCCAACAACGAGCTTCCCGAAGAATCTGAGAAACGTATCGCTAAAACAATGATGCGGCGGAATGCTATGACTATTCTAGAATGTTCCACCGCCTGGGCCTTTAGATGGTTCCATGGCGCGTTTTATTGCTCTTACTGTGAATCTAAACACGTGGATATTCATCCATTAAGGGAACACGTTCGTCTAAATCATTTAAATCAGGCACCGACCAAAAAGATTTTCTCTAAATTAACGGAAAATAACATGGTTAAAGTCGACGTAGCCGACCTTAGTTGTAGGATTTGCAATCGGATTTTGAGTGGAATAGGAGCTTTAAAAGAACATTTATTGATACATAACAGGCATCTGCATGCCAACTATAGCGATGGAGTACTTCCCTTCAAGCTTGACGATGAGGGCTTTTATTGTCAGATGTGTTTCATACACTTTCATAATTTCGCTCGAGTTAATGAGCACATGAATAGCCACTATCAAAATTACATTTGCGACACATGCGGTAAGGCGTTCGTTTCTAAATCCCGGTTTAGGAAACATGTGCAATCACATGAGAAAGGGAGCTTCCCTTGCGGCTCGTGCGATGAAGTGCTGGAGACGCGAGCTGCCAGAATGTTTCATAGGATGCGCGTGCACCGCAAGGGCATTCGGTACACGTGCCCTCGATGTCCTGAAGTATTCACATCGTATCACGCGAGGGTGCGGCATCTTGTAGACATACACGACCAGCAGAAGATCGAGTATACTTGTGATGTTTGTGGGAAATCTTTCGAAACGAgattGAATGAAGAATTGAAGAAACCAGAAGACGGCGCCATTAAAGTTGTATGGAAACGTAAAAGAGGTGTTTTGATCGAAGATAAGGCAAACGCCGCGATGATTCTAAAGTATTCTAATGCCGTTGTATTTAGATGGCACAGGGGAAAGTTTATGTGCGCATATTGTCCTCAAATATGCATTAACGTTGCTGCAGTTCGTTTACATTCAATGATTCACGATAACAGACttgatatttttgaaaaacaaGAAGTACGAAATACGTTTCCATTAAGAGTTGACATAACCAATTTATCGTGCGAAATTTGCAAACAAGGGGTGAAAAGTATAGACGATTTTAAAACTCATCTAGCTCAGGTGCATTCGCATAATTTGGACCCAAACTATACAGACGGCGTGATTCCATTTGTTCTAACTGAAAAAGATTTCAAATGCGTGCTCTGTGGTGCACAATTCGAAGGATTCATGAAACTTTTCATTCACATGAATACTCATTATCAGAGTTTTATATGTCATATATGTGGAAAAGGGTATTCAGCGAAGCACAAGTTGCGTAATCACAAGATGAGTCACGAGTTAGGAGAGTTCCAATGCTCCAGATGCGACAAGGTGCTACCCAGTCGACCCGCCAAAGACAGGCATGTAGCAGCGGTGCATGCCCGCAAAGAGAAATACAGATGCCCTTTATGCGATATGTATTTTGATTCGTATCACACTAGAGTGATTCATTTGGATAAAGTTCATGGCCAGAAGGTTGAGTATAGATGCAGTTTGTGTCCGGCGGTGTTCGGAACAGCTATTTTAAGATATGCACATACAAAAGTTGCTCatatgaagaagaagaagaagaaaaatccAAAATGA
- Protein Sequence
- MRIDEPFLFLGERRLTTDENVKVETNIAPLKKEKYKRSARAEARIITKKNAAAILECWTMCPFRWKKNRFKCAYCEDNFIDSDSLRTHVKLCSKQHTIKDIYTKFKEMPLINIDVVGSVCVFCSVPFTDVKQMRDHVVQHGFEFNCSHPDGVLPFYLNKEWKCVICEKQFNNFLKLYEHMNVHYQHYICAICGKGYMTAPRLRKHSEGHISGSFPCNECGKQFTMRVSRDSHKATVHAKEPRYECPHCNIRFKGYYERMDHLKVAHRQTEVSYRCVHCDLSFKTSGKRAAHVSSVHFPHEYDFDCSAAEAELGIKRGRKLKEVVTARQMRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFHGAFYCSYCESKHVDIHPLREHVRLNHLNQAPTKKIFSKLTENNMVKVDVADLSCRICNRILSGIGALKEHLLIHNRHLHANYSDGVLPFKLDDEGFYCQMCFIHFHNFARVNEHMNSHYQNYICDTCGKAFVSKSRFRKHVQSHEKGSFPCGSCDEVLETRAARMFHRMRVHRKGIRYTCPRCPEVFTSYHARVRHLVDIHDQQKIEYTCDVCGKSFETRLNEELKKPEDGAIKVVWKRKRGVLIEDKANAAMILKYSNAVVFRWHRGKFMCAYCPQICINVAAVRLHSMIHDNRLDIFEKQEVRNTFPLRVDITNLSCEICKQGVKSIDDFKTHLAQVHSHNLDPNYTDGVIPFVLTEKDFKCVLCGAQFEGFMKLFIHMNTHYQSFICHICGKGYSAKHKLRNHKMSHELGEFQCSRCDKVLPSRPAKDRHVAAVHARKEKYRCPLCDMYFDSYHTRVIHLDKVHGQKVEYRCSLCPAVFGTAILRYAHTKVAHMKKKKKKNPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01010633; iTF_01430164; iTF_00820344;
- 90% Identity
- -
- 80% Identity
- -