Tjap016223.1
Basic Information
- Insect
- Theretra japonica
- Gene Symbol
- -
- Assembly
- GCA_033459515.1
- Location
- CM065948.1:16943021-16949438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0099 0.64 10.9 0.4 1 21 68 88 68 89 0.95 2 20 6.9 4.4e+02 1.9 0.3 2 23 117 138 116 138 0.93 3 20 0.073 4.7 8.2 0.5 2 23 160 181 159 181 0.94 4 20 0.086 5.5 7.9 0.6 1 20 185 204 185 207 0.89 5 20 0.0033 0.21 12.4 0.2 1 23 212 235 212 235 0.88 6 20 0.013 0.82 10.5 1.3 1 23 241 264 241 264 0.95 7 20 0.011 0.71 10.7 0.6 1 23 271 294 271 294 0.90 8 20 0.0075 0.48 11.3 1.9 1 23 373 396 373 396 0.96 9 20 1.1 69 4.5 0.1 2 23 423 444 422 444 0.94 10 20 0.16 10 7.1 1.6 1 23 466 488 466 488 0.98 11 20 1.1e-05 0.0007 20.2 0.8 1 23 492 514 492 514 0.98 12 20 0.027 1.7 9.5 1.0 1 21 548 568 548 571 0.89 13 20 0.012 0.8 10.6 0.3 3 21 580 598 578 599 0.90 14 20 0.36 23 6.0 0.4 1 23 648 670 648 670 0.93 15 20 0.18 12 6.9 0.1 2 23 696 718 695 718 0.92 16 20 0.032 2 9.3 2.2 1 23 740 762 740 762 0.98 17 20 0.00044 0.028 15.2 3.3 1 23 766 788 766 788 0.98 18 20 0.0049 0.32 11.8 0.1 1 23 793 816 793 816 0.90 19 20 0.0071 0.46 11.3 1.6 1 23 822 845 822 845 0.96 20 20 0.016 1.1 10.2 0.1 1 23 851 874 851 874 0.97
Sequence Information
- Coding Sequence
- ATGTTTGAAACAGAAAACGGCCACGTAGGAAAACGCAGACTTACAACCGATGAGAATATTAAAGTTGAGACAAATATAGAGCAGAAAAAAGAGCCATACAAAAGAAGCGCCCGCGCCATAGCCAGGATAATCACAAAGAAAAACGCCGCGGCGATTCTCGCGTGTTGGAATCTTTGTCCGTTCAGGTGGAAGAAGAATCGATTCAAGTGCGCTTACTGCGAAGAAAACTTCATCGAGTGCGATCTGTTGAGGGCCCACGTGAAGCTGTGCTCATCGCGGCACACCGTCGTGGATATTTATAGCAAGTTTAAAGAAATGTCATTAATCAATGTCGATATGGTTGGAAGTGTTTGCGTTTACTGCGCCGTCCCGTTCCATGACGTGAAGCAAATGCGAGACCATGTCACACAACATGGCTTCGACTTCGATTACAACCATCCCGACGGAGTGCTTCCCTTCTATCTTGACAAGGAATGGAAATGTATAATATGTGAGAAGCAATTCAACAACTTTTTAAAACTGTACGAGCACATGAACATACATTACCAACATTACATATGCGCCACGTGTGGCAAGGGTTACATGACGGCTCCTAGGTTAAGGAAACATTGTGAAGTTCATATAAGTGGCTCCTTCCCTTGCAACGAGTGTGGAAAAGTGTTTACTATGAGAGTAGCGAGAGATTCCCATAAAGCAACGGCGCATGCGAAAGGACCGCGGTACGAGTGCCCTCACTGCAGCATGAGGTTCAAAGGGTACTATGATAGGATGGAACATCTGAAAGAAGCTCACAGCCAGAGCGAGGTCTCTTATCGATGTGTCCACTGCGAAATGTCCTTTAAAACGAGCGGCAAGCGAGCGGCGCATGTGTCAGCTGTTCATTTTCCACCTGAGTACGATTTTGATTgttCCGCCAATGACGCGGAGTTAGGCATTAAACGCGGTAGGAAATTAAAGGAAGTAGTGACAGCGCGCCAGATGCGCAGGCGACGGCGCGCCAATAACGAGCTGCCTGAAGAATCAGAAAAGCGCATCGCCAAAACCATGATGCGGCGGAACGCTATGACTATCCTAGAATGTTCCACAGCGTGGGCCTTTAGATGGTGCCAGGGCGCGTTTTACTGTTCCTACTGCGAAactaaatatgtagatatacaCTTGCTAAGAGAACACGTCCGCTTGTACCATTTAAATCAGGCTCCCACGAAAAAGATCTTCGCCAAGTTAACTGAAAACAATATGGTCAAAGTGGACATAGCTGATCTTAGCTGTAAACTATGCAATAGCGTCGTAAACGGATTAACATCTTTGAAAGAACATTTATCAGCTCATAACAGACCTTTAAATACCGATTACAGCGATGGAGTTCTTCCTTTTAAGCTTGACGATGACGGTTTCTATTGTCAAATTTGTTTCCTTCAATTCTTTAGTTTTGCACGGGTCAACGAACACATGAACACTCATTATCAGAACTATATTTGCGACACATGCGGCAAAGCGTTTGTATCGAATTCTCGATTTAGAAAACACGTTCAATCTCACGAGAAAGGAAACTTTCCTTGTGGCTCGTGCAATGAAGTGCTGGAGACGCGAGCCGCGAGAATGTTTCATAGGCTGCGAGTGCATCGCAAGGGCCTAAGGTACACGTGTCCTCGATGCTCTGAAATGTTCACTTCGTATCATATGAGAGTGCGCCACCTGGTAGACGTTCATGGGCAGCAGAAGGTAGAATATGGCTGTGAAGTTTGTGGGAAAACATTTGAAACCAGCTCCAAGCGCGCGGGACACCATCgattGAATGAAGATTCGAAGAATCCAGAAGATAGCCCGATTAGGATCGTGTGGAAGCGCAAGAGGAGCGTTTTGATCGAAGACAAAGCAAACGCCGCAATAATTCTAAAGTACTCTAACGCCGTGGTATTCAGATGGCAAAGAGGAAAGTTCATGTGCGCGTACTGTCCGCAGATGTGCACGAGCGTGGACGCAGTGCGCTTACATTCTACAATCCATAGCAACAAACTTGACATATTTGAGAAGCCTGAAGTCCGCAACTCATTTCCTCTTAGAGTCGACATAACTGATTTATCTTGCGAATTATGTAAAAAGAGAGTACAGAGTATAGATGGCTTGAAAACACATTTGGCTCAAGCACATTCCCATAAAACAAATCCAAAGTATACGGACGGGGTGATACCTTTTGTTCTGACTGAAAAGGAGTTTAAATGTGTACACTGCGGTACACAATACGAGGGATTCATGAAGCTCTTCATTCACATGAACAATCATTATCAAAGTTTTATATGTCACGTATGTGGTAAAGGATATTCTGCGAAGCATAAGTTGAGTGCTCACAGAAAGAGCCACGAGTTGGGCGAGTTCCAATGTTCCAAGTGCGACATGGTGTTTCCGAGTCGACCAGCTAAGAATAGGCACGTGGCAGCGGCGCATGCGCGGAAAGAGAAGTATAGATGCCCTGTGTGCGATGAGTATTTCGATTCGTACCATTCCAGATTGCGACATTTGGACAAGATTCATGGACAGAAAACAGAGTATAAATGCAGCTTGTGTCCAGCTGTGTTCGGAACAGCCACCTTGAGATATTCCCACATAAAAGTTGTGCACATGAAGAAGAAAAAGACATCATAG
- Protein Sequence
- MFETENGHVGKRRLTTDENIKVETNIEQKKEPYKRSARAIARIITKKNAAAILACWNLCPFRWKKNRFKCAYCEENFIECDLLRAHVKLCSSRHTVVDIYSKFKEMSLINVDMVGSVCVYCAVPFHDVKQMRDHVTQHGFDFDYNHPDGVLPFYLDKEWKCIICEKQFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHCEVHISGSFPCNECGKVFTMRVARDSHKATAHAKGPRYECPHCSMRFKGYYDRMEHLKEAHSQSEVSYRCVHCEMSFKTSGKRAAHVSAVHFPPEYDFDCSANDAELGIKRGRKLKEVVTARQMRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWCQGAFYCSYCETKYVDIHLLREHVRLYHLNQAPTKKIFAKLTENNMVKVDIADLSCKLCNSVVNGLTSLKEHLSAHNRPLNTDYSDGVLPFKLDDDGFYCQICFLQFFSFARVNEHMNTHYQNYICDTCGKAFVSNSRFRKHVQSHEKGNFPCGSCNEVLETRAARMFHRLRVHRKGLRYTCPRCSEMFTSYHMRVRHLVDVHGQQKVEYGCEVCGKTFETSSKRAGHHRLNEDSKNPEDSPIRIVWKRKRSVLIEDKANAAIILKYSNAVVFRWQRGKFMCAYCPQMCTSVDAVRLHSTIHSNKLDIFEKPEVRNSFPLRVDITDLSCELCKKRVQSIDGLKTHLAQAHSHKTNPKYTDGVIPFVLTEKEFKCVHCGTQYEGFMKLFIHMNNHYQSFICHVCGKGYSAKHKLSAHRKSHELGEFQCSKCDMVFPSRPAKNRHVAAAHARKEKYRCPVCDEYFDSYHSRLRHLDKIHGQKTEYKCSLCPAVFGTATLRYSHIKVVHMKKKKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00341576;
- 90% Identity
- iTF_00820344;
- 80% Identity
- -