Cbil000400.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- bab1
- Assembly
- GCA_036417725.1
- Location
- CM071137.1:9224499-9227785[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9e-18 1.5e-14 54.0 0.0 1 43 58 101 58 103 0.95 2 2 2.6 4.3e+03 -1.9 1.6 6 15 195 204 191 206 0.83
Sequence Information
- Coding Sequence
- ATGTCACACCCTATAACCAAATTGATGTTCATTTATACTGACACGCTACTGTTCTCCTCAACAGACAGCTACCAATACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACAAATCAGAACCTGGTGCACAACTTGAGATTCCGTGAACGCGGCCCGCTGAAGTCCTGGCGCCCAGAGACCATGGCCGAGGCAATTTTCTCCGTGCTCAAGGAAGGCCTTTCCTTATCCCAAGCGGCGAGGAAGTACGACATACCGTACCCTACCTTCGTTCTCTACGCTAACCGGGTTCATAACATGCTGGGGCCGAGCGCGGATGGCGGGGCTGATTTGAGACCAAAAGGGCGGGGGCGACCGCAGAGAATTCTGTTGGGCGTTTGGCCTGACGAACACATCCGCGGCGTCATTCGTGCCGTCGTGTTCCGCGACACACACGCTCCGCACGCCAATCCACACCACATGCGCGAGATCGATTTGCCGACGTACCCAGCCATCACGGACGGTACCGTGGCGCCGAACGCGTACACCGGCGTGGGGTGCGGGAACGGGCGCGAGGAGCGCGTGTCGCCGaacgcggccgccgccgccgccgtggCCGCCGTCGCGCACGGCCTGCGGCGACAGATGTGCAACATGGTGGTGGCTGCGCAGCGCCCGCCCGACCAGCCCCCACACCTGGGCCTGCCCTCGCTGCCGCTGCAGTCGCCGCGGCTGCCGTCGCCGCTCTCCTCCGGCCTGGAGTCGCCGCTGTGCTCGCCGCTGCCGCCGGGACAGGCGCTCGAACCCGCCAAGCCGGCTGATCCGTTCCGCCCGTTTGTGTCGCCGCGGCCCGAGAGCCGCTTCGGAGAACGCGAGACGGCCGTGGAGCCCATGGAGATGGGGCCGCCGAAAACACCGGTGCCGGCGCGCAACGGCCAGCCACCTGCACCCATGGACCTGGAGGCGCCGGCGGACGAGCGGGCGGACATTTGA
- Protein Sequence
- MSHPITKLMFIYTDTLLFSSTDSYQYQLQSMWQKCWNTNQNLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHANPHHMREIDLPTYPAITDGTVAPNAYTGVGCGNGREERVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPPDQPPHLGLPSLPLQSPRLPSPLSSGLESPLCSPLPPGQALEPAKPADPFRPFVSPRPESRFGERETAVEPMEMGPPKTPVPARNGQPPAPMDLEAPADERADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00187066;
- 90% Identity
- iTF_01316233;
- 80% Identity
- -