Basic Information

Insect: Cinara cedri
Gene Symbol: -
Assembly: GCA_902439185.1
Location: CABPRJ010000957.1:1452213-1454150[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.21 1.4e+03 -0.3 0.1 14 44 48 75 46 82 0.79

2 18 0.0073 48 4.3 0.1 23 44 82 103 77 112 0.85

3 18 0.0012 8 6.8 0.2 20 48 135 163 129 165 0.88

4 18 0.00011 0.7 10.2 0.1 21 47 165 191 162 198 0.84

5 18 0.087 5.7e+02 0.9 0.0 23 44 195 216 191 225 0.83

6 18 0.15 9.9e+02 0.1 0.0 21 43 221 243 219 248 0.83

7 18 0.00072 4.7 7.5 0.1 21 44 249 272 244 281 0.86

8 18 0.47 3.1e+03 -1.5 0.0 23 44 279 300 275 308 0.81

9 18 0.00093 6.1 7.2 0.1 23 44 307 328 303 337 0.84

10 18 0.0052 34 4.8 0.0 23 43 335 355 330 361 0.89

11 18 5.3e-05 0.34 11.2 0.0 21 45 361 385 357 392 0.88

12 18 0.025 1.7e+02 2.6 0.0 21 46 389 414 385 422 0.86

13 18 0.26 1.7e+03 -0.6 0.1 22 46 418 442 415 448 0.76

14 18 0.071 4.7e+02 1.1 0.1 16 44 440 468 434 478 0.80

15 18 0.00049 3.2 8.1 0.2 21 47 501 527 498 538 0.88

16 18 0.00065 4.2 7.7 0.3 21 45 557 581 554 588 0.87

17 18 0.0081 53 4.2 0.0 21 45 585 609 581 616 0.85

18 18 0.027 1.8e+02 2.5 0.0 21 43 613 635 608 640 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.21	1.4e+03	-0.3	0.1	14	44	48	75	46	82	0.79
2	18	0.0073	48	4.3	0.1	23	44	82	103	77	112	0.85
3	18	0.0012	8	6.8	0.2	20	48	135	163	129	165	0.88
4	18	0.00011	0.7	10.2	0.1	21	47	165	191	162	198	0.84
5	18	0.087	5.7e+02	0.9	0.0	23	44	195	216	191	225	0.83
6	18	0.15	9.9e+02	0.1	0.0	21	43	221	243	219	248	0.83
7	18	0.00072	4.7	7.5	0.1	21	44	249	272	244	281	0.86
8	18	0.47	3.1e+03	-1.5	0.0	23	44	279	300	275	308	0.81
9	18	0.00093	6.1	7.2	0.1	23	44	307	328	303	337	0.84
10	18	0.0052	34	4.8	0.0	23	43	335	355	330	361	0.89
11	18	5.3e-05	0.34	11.2	0.0	21	45	361	385	357	392	0.88
12	18	0.025	1.7e+02	2.6	0.0	21	46	389	414	385	422	0.86
13	18	0.26	1.7e+03	-0.6	0.1	22	46	418	442	415	448	0.76
14	18	0.071	4.7e+02	1.1	0.1	16	44	440	468	434	478	0.80
15	18	0.00049	3.2	8.1	0.2	21	47	501	527	498	538	0.88
16	18	0.00065	4.2	7.7	0.3	21	45	557	581	554	588	0.87
17	18	0.0081	53	4.2	0.0	21	45	585	609	581	616	0.85
18	18	0.027	1.8e+02	2.5	0.0	21	43	613	635	608	640	0.90

Sequence Information

Coding Sequence: ATGCACAACTCCAAAGTAGAAATAGAACAATCAAATGACCAAACAATTGTAATAAAAAAAGAATTTGATTTAATAAATGGTTGTATGTTTGAAAGTACAATAACTATTGAAAATGATCCTATGATATCAATTTTACATAAAAAACCAAGACTTAGAAAAAAGAGTTATACCTGCAATAACTGTGGTAACATATTTAATTCAAAATCAAAATTAAAATCACATCTAATGAAATATATAAAGGAGAAGGTACATAAGTGCAATGTTTGTGAAAAAATATTTAGTCAGTCATCCAGTTTAAACCGACATAAGTTAATTCATAACGGAGAAAAGCATTTCAAATGTGATGTTTGTGAAAAATCATTTTGGGCAATATCTGCTTTGAAGAGCCACAAAGTGACTCATAAAGGAGAAAAGCCTTACAAATGTAATATTTGCAAATTATCATTAACTCGATTGCACAATTTAAACCGGCATAAGTTAATTCATCATAAAGGAGAAAAGCCTTACAAATGCGATGTTTGTGAAAAATCATTTACTCAATCGTCTAATTTAACACGGCATAAGTTAATTCATAAAGGAATAAAGCCTTACAAATGCAATGTTTGCAAAGTATCATTTGGTCAGTTATCCAATTTAAAGGCGCATAATTTAATTCATACAGGAGAAAAGCCTCACAAATGCAATGTTTGTAAAATATCATTTAGGACAATATCTGCTTTGAAGGGCCACAAATTGACGCATACAGGAGAAAAGCCTTACAAATGTAATGTTTGTGAAGTATCATTCACTCAAATGCACAATTTAAACCGACATAATTTAACTCATAAAGGAGTAAAGCCTTACAAATGCAATGTTTGTGAAAAATCATTTAATCAGTTGTCCACTTTAAAGCAGCATAAGTTAATTCATAGTGGAGTAAAGCCTTACAAATGCAATGTTTGTGAAAAATCATTTACTCAATCGTCTAATTTAACACGGCATAAGTTAACTCATAAAGGAGTAAAGCCTTACAAATGCAATGTTTGTGAAGTATCATTTACTCAAGTTGGCAATTTAAAGCGGCATAAGTTAATTCATAAAGGAGAAAAGCCTTACAAATGCAGTGTTTGTGAACTATCAATTAGGACATCATTTGATTTGAAGCGTCATATAATGACTCACACAGATGAAAAACCTTTCAAATGTAATTTTTGTGAAATATCATGTAAGACAAAATATAATTTGAAGACTCACTTAATGACTCATACAGGAGAAAAGCCTTTCAAATGTAATGTTTGCAAAGTATCATTTTCTCTGTTGTCTAGTTTAAATCGGCACAAGTCAGTTCATAAAAGAGAAAAACCTTACAAATGTATTGTTTGTGAAAAATCATTTACTCAAATGTCAAGTTTAAAGGTGCATAGTTTAATTCATAATGGAGAAAAGCCTCACAAATGCAATGTTTGTGAAAAATCATTTACTCATTTGTCAAGTTTAAAGGGGCATAATTTAATTCATAAAGGAGAAAAGCCTTACAAGTGCAATGTTTGTAAAATGGCATTTAGGACGATATCTAATTTGAGGTGTCATATTAAAACTCATACCGATGAAAAACCTTTCAAATGCAATTTTTGTGAAATATCATGTAAGACAAAATCTATTATGAAGTACCACTTAATGACTCATACAGGAGAAAAACCTTATACATGTAATGTGTGTAAAGTATCATGTAGGAAAAAATCTGCTTTGAGGATCCACATAATGACTCATACAGGTGAAAAGCCTCACAAATGTAATGTTTGCAAATTATCATTTACTCATTTGTCCAATTTAAAGCGGCATAAGTTAATTCATAAAGGAGAAAAGCCTTTCAAATGTAATTTTTGCAATGTATCATTTACTCATTTGTACAATTTAAAGCGGCATAAGTTAATTCATACAGGAGAAACAGCCTTTTAA
Protein Sequence: MHNSKVEIEQSNDQTIVIKKEFDLINGCMFESTITIENDPMISILHKKPRLRKKSYTCNNCGNIFNSKSKLKSHLMKYIKEKVHKCNVCEKIFSQSSSLNRHKLIHNGEKHFKCDVCEKSFWAISALKSHKVTHKGEKPYKCNICKLSLTRLHNLNRHKLIHHKGEKPYKCDVCEKSFTQSSNLTRHKLIHKGIKPYKCNVCKVSFGQLSNLKAHNLIHTGEKPHKCNVCKISFRTISALKGHKLTHTGEKPYKCNVCEVSFTQMHNLNRHNLTHKGVKPYKCNVCEKSFNQLSTLKQHKLIHSGVKPYKCNVCEKSFTQSSNLTRHKLTHKGVKPYKCNVCEVSFTQVGNLKRHKLIHKGEKPYKCSVCELSIRTSFDLKRHIMTHTDEKPFKCNFCEISCKTKYNLKTHLMTHTGEKPFKCNVCKVSFSLLSSLNRHKSVHKREKPYKCIVCEKSFTQMSSLKVHSLIHNGEKPHKCNVCEKSFTHLSSLKGHNLIHKGEKPYKCNVCKMAFRTISNLRCHIKTHTDEKPFKCNFCEISCKTKSIMKYHLMTHTGEKPYTCNVCKVSCRKKSALRIHIMTHTGEKPHKCNVCKLSFTHLSNLKRHKLIHKGEKPFKCNFCNVSFTHLYNLKRHKLIHTGETAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00340760;
90% Identity: iTF_00340760;
80% Identity: iTF_00340760;