Cced012538.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cinara cedri
Gene Symbol
-
Assembly
GCA_902439185.1
Location
CABPRJ010000957.1:1452213-1454150[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.7e-05 0.0037 17.8 0.9 1 21 56 76 56 77 0.95
2 21 1.6e-06 0.00013 22.4 2.5 1 23 84 106 84 106 0.97
3 21 0.012 0.95 10.2 0.3 1 23 112 134 112 134 0.95
4 21 0.00014 0.011 16.3 4.9 1 23 140 162 140 163 0.96
5 21 3.8e-08 3e-06 27.5 1.5 1 23 169 191 169 191 0.98
6 21 1.8e-05 0.0014 19.1 0.4 1 23 197 219 197 219 0.97
7 21 0.00013 0.011 16.3 2.1 1 23 225 247 225 247 0.98
8 21 2e-05 0.0016 18.9 2.7 1 23 253 275 253 275 0.98
9 21 1.7e-06 0.00013 22.3 1.7 1 23 281 303 281 303 0.98
10 21 2.2e-08 1.7e-06 28.3 2.6 1 23 309 331 309 331 0.99
11 21 5e-06 0.00039 20.8 0.5 1 23 337 359 337 359 0.98
12 21 1.7e-05 0.0013 19.2 0.8 1 23 365 387 365 387 0.99
13 21 3.4e-05 0.0027 18.2 5.6 1 23 393 415 393 415 0.99
14 21 4.2e-05 0.0033 17.9 1.3 1 23 421 443 421 443 0.98
15 21 0.0003 0.023 15.2 0.6 1 23 449 471 449 471 0.96
16 21 0.0001 0.0079 16.7 3.7 1 23 477 499 477 499 0.96
17 21 0.00011 0.0085 16.6 3.6 1 23 505 527 505 527 0.99
18 21 0.056 4.4 8.1 4.8 1 23 533 555 533 555 0.98
19 21 1.6e-05 0.0012 19.3 2.3 1 23 561 583 561 583 0.99
20 21 1.9e-05 0.0015 19.0 5.8 1 23 589 611 589 611 0.97
21 21 2.3e-05 0.0018 18.8 4.9 1 23 617 639 617 639 0.98

Sequence Information

Coding Sequence
ATGCACAACTCCAAAGTAGAAATAGAACAATCAAATGACCAAACAATTGTAATAAAAAAAGAATTTGATTTAATAAATGGTTGTATGTTTGAAAGTACAATAACTATTGAAAATGATCCTATGATATCAATTTTACATAAAAAACCAAGACTTAGAAAAAAGAGTTATACCTGCAATAACTGTGGTAACATATTTAATTCAAAATCAAAATTAAAATCACATCTAATGAAATATATAAAGGAGAAGGTACATAAGTGCAATGTTTGTGAAAAAATATTTAGTCAGTCATCCAGTTTAAACCGACATAAGTTAATTCATAACGGAGAAAAGCATTTCAAATGTGATGTTTGTGAAAAATCATTTTGGGCAATATCTGCTTTGAAGAGCCACAAAGTGACTCATAAAGGAGAAAAGCCTTACAAATGTAATATTTGCAAATTATCATTAACTCGATTGCACAATTTAAACCGGCATAAGTTAATTCATCATAAAGGAGAAAAGCCTTACAAATGCGATGTTTGTGAAAAATCATTTACTCAATCGTCTAATTTAACACGGCATAAGTTAATTCATAAAGGAATAAAGCCTTACAAATGCAATGTTTGCAAAGTATCATTTGGTCAGTTATCCAATTTAAAGGCGCATAATTTAATTCATACAGGAGAAAAGCCTCACAAATGCAATGTTTGTAAAATATCATTTAGGACAATATCTGCTTTGAAGGGCCACAAATTGACGCATACAGGAGAAAAGCCTTACAAATGTAATGTTTGTGAAGTATCATTCACTCAAATGCACAATTTAAACCGACATAATTTAACTCATAAAGGAGTAAAGCCTTACAAATGCAATGTTTGTGAAAAATCATTTAATCAGTTGTCCACTTTAAAGCAGCATAAGTTAATTCATAGTGGAGTAAAGCCTTACAAATGCAATGTTTGTGAAAAATCATTTACTCAATCGTCTAATTTAACACGGCATAAGTTAACTCATAAAGGAGTAAAGCCTTACAAATGCAATGTTTGTGAAGTATCATTTACTCAAGTTGGCAATTTAAAGCGGCATAAGTTAATTCATAAAGGAGAAAAGCCTTACAAATGCAGTGTTTGTGAACTATCAATTAGGACATCATTTGATTTGAAGCGTCATATAATGACTCACACAGATGAAAAACCTTTCAAATGTAATTTTTGTGAAATATCATGTAAGACAAAATATAATTTGAAGACTCACTTAATGACTCATACAGGAGAAAAGCCTTTCAAATGTAATGTTTGCAAAGTATCATTTTCTCTGTTGTCTAGTTTAAATCGGCACAAGTCAGTTCATAAAAGAGAAAAACCTTACAAATGTATTGTTTGTGAAAAATCATTTACTCAAATGTCAAGTTTAAAGGTGCATAGTTTAATTCATAATGGAGAAAAGCCTCACAAATGCAATGTTTGTGAAAAATCATTTACTCATTTGTCAAGTTTAAAGGGGCATAATTTAATTCATAAAGGAGAAAAGCCTTACAAGTGCAATGTTTGTAAAATGGCATTTAGGACGATATCTAATTTGAGGTGTCATATTAAAACTCATACCGATGAAAAACCTTTCAAATGCAATTTTTGTGAAATATCATGTAAGACAAAATCTATTATGAAGTACCACTTAATGACTCATACAGGAGAAAAACCTTATACATGTAATGTGTGTAAAGTATCATGTAGGAAAAAATCTGCTTTGAGGATCCACATAATGACTCATACAGGTGAAAAGCCTCACAAATGTAATGTTTGCAAATTATCATTTACTCATTTGTCCAATTTAAAGCGGCATAAGTTAATTCATAAAGGAGAAAAGCCTTTCAAATGTAATTTTTGCAATGTATCATTTACTCATTTGTACAATTTAAAGCGGCATAAGTTAATTCATACAGGAGAAACAGCCTTTTAA
Protein Sequence
MHNSKVEIEQSNDQTIVIKKEFDLINGCMFESTITIENDPMISILHKKPRLRKKSYTCNNCGNIFNSKSKLKSHLMKYIKEKVHKCNVCEKIFSQSSSLNRHKLIHNGEKHFKCDVCEKSFWAISALKSHKVTHKGEKPYKCNICKLSLTRLHNLNRHKLIHHKGEKPYKCDVCEKSFTQSSNLTRHKLIHKGIKPYKCNVCKVSFGQLSNLKAHNLIHTGEKPHKCNVCKISFRTISALKGHKLTHTGEKPYKCNVCEVSFTQMHNLNRHNLTHKGVKPYKCNVCEKSFNQLSTLKQHKLIHSGVKPYKCNVCEKSFTQSSNLTRHKLTHKGVKPYKCNVCEVSFTQVGNLKRHKLIHKGEKPYKCSVCELSIRTSFDLKRHIMTHTDEKPFKCNFCEISCKTKYNLKTHLMTHTGEKPFKCNVCKVSFSLLSSLNRHKSVHKREKPYKCIVCEKSFTQMSSLKVHSLIHNGEKPHKCNVCEKSFTHLSSLKGHNLIHKGEKPYKCNVCKMAFRTISNLRCHIKTHTDEKPFKCNFCEISCKTKSIMKYHLMTHTGEKPYTCNVCKVSCRKKSALRIHIMTHTGEKPHKCNVCKLSFTHLSNLKRHKLIHKGEKPFKCNFCNVSFTHLYNLKRHKLIHTGETAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00341000;
90% Identity
iTF_00341000;
80% Identity
iTF_00341000;