Cced016248.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- PAXBP1
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010001428.1:2116812-2121599[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.48 4.7e+03 -3.0 0.0 58 94 276 315 272 348 0.64 2 2 2.3e-25 2.2e-21 76.8 8.7 4 272 536 745 533 747 0.92
Sequence Information
- Coding Sequence
- ATGGCGTTGCAATTTAAGAAACCCAAACGGAATTTGCGAGTTAGAGATTCTGATGGCATCTATGATAATGAAAACGAAGAAAAAATGGATGTAGATACAGTACTTAAGCTGCCAAAATCAAATAAAGAAAAAGGTTTAAAAAAAATCAACACATTGAGTTTTGGCGATGAATTAAATGAGTGTGATGATGGTGAAGAGTTCAAAGTTAAAAAATCATCATACAGTAAGAAAATTAAAAAACAAATGAATAAAGAAAAAATGAGTAAAGATAAAATAGAAAATGGCAAGAAATCTAAAGTTATAATGAGTGATACTACAATACCAACTGTGCGAGAAAAACAAACAAATTTTAATTCAGAATCTGTGGAGAAAGAAATAATGCTTACAGGCCGGGCTGCTGAAATGGCGGGCTATGAATCATCTGATGAAGACGATTCGTATAACTCATCCACACATAAATTTTCTAATCCTGACCAAGTTAAAATATTATTAAGAAATGGTCAAATTCCTGACGCAGCATTAATACATGCTGCTAGAAAAAGTAGACAACAGGCACGTGATTTAGGAGAAGATTTTATACCAATATCATCACAGTCTCATGGTGAATCTAATATTGAAAATGAACAAATTACTGGTAGGCGTTTAACACGAGAAGAAGATGAATTAGAAGATAGTGATGATGATGGTAGAATTATCATGTCTGGAATTGTTAGTCAAGCTGAGGATCGTAAAAAAAATCTACATATTACTATGGCTGATCACACTACCAGTAGTGATTTTCAAGATCCTGATGAACTTGATGAAGATAATGATTGGGAAACTCAACAGATCAGGAAAGCAGTTACAGGATCACAATTAGCTGCAGCCCAACAAGAATCTGCTAGTATAGCCTCAATATACAATAATATGATTATCCAAGAAGAAACAATGATACCAACATTAGTCAATCAAAAAGCTCGATTTCTGGATTCCTATGTTCCACAAGGATTGATGTCTTCAATGAGTCCAGATGATGTCATCAATAAAATCGTAGAAATATTGAGTGAGATGAAAGAAAAACGAATTCCAGAAAAAAAGTATTTTGAAGATATGATAAATGAAATACCAGAAGTCAAGAATAAAATTGAAATGCTTAAAAAAAGGGTTCCTGAGTTAGCGGAATGTTTTCAGTTTTATCAAGATTTGCGTGGGTACGTCACTGATCTGGTAGAATGTCTTGATGAAAAGATTCCTATTCTTGTGGGACTAGAACAACGTGTATGTAAATTGTATGAAAAAAGACGTACAGATCTATTAAATAGGCGTAGACAAGATGTTCGAGATCAAGCAGATGAAGCTTCATCTAATAAATTAGGAAATTCATCAACTTCTCATACAAGATCTGAAGAACAACAGAGAAGAGCTGCAGAGCGTGAAGGTCGTCGTATAAGACGTATGAGAATGAGAGAACTAAAAGCTATAAGTAAACACGCAGATGGTATGTCTAGCGATGAAGAAGTCCCTGAAACCGATGCATCTGCATTTAGATCTCAACTAGAGGTTATAAAAAGTGATTCGAATCTATTAATGGACGATGTTCTTGAACAATTTGCATCAGTTGATTTAGTTTTGAAACAAATGTTAGAATGGAAAAGAAAACATCCGGACACTTATGTAGAAGCATATGTTAATGTGTGTTTACCAAATATGATGGGACCTTTTGTTCGAATTGAAATGTTAACATGGAATCCATTGGAGAGCGATTTAATGTTTGAAAATATGCTGTGGTACAAAAGTATGCAAGAATATACAATGATGAGTGTAAATAATGTAGAACAATTGTCAAAAGATGTTGATTTAGAACTAATACCTAAAATAATAGAAAAAGTTGTACTTAATAAAATTGATCAAATGATTACAAGTCAGTGGGATCCACTATCATCAAAGCAAACAAAACATATTTCTTGCATAATTAAGCACATCCTGGATAACTATCCTACTATAGATCCAGACAGTAAATTTTTAATGTTACTGTTAACCAATTTAGTGACTAGAATTCGAGATGCTGTCGATTATGATGTATTTATTCCTATTTCATCTAGACAAATTATGAATACTGGTCGTATGAATGTGTTTTTCCAGCGACAATTCAACATAGCTGTAAAACTTTTGAGTAATATACTTTATTGGCATCAAATCATTGAAGATGCAGTGTTAATTGATTTAGCTGTAAATCAAATACTTAATAGATACTTATTAACATCTATTAGAACTCTTCAGCCATTAGAAGCCATTTTAAAAATTACAATGATCGCTCGAACACTACCTAGTTCATGGTTGTCTTATGGAAGTAATACACCTAAAGAATTAACTTCATTTTTAAATCAGTCAAAATTAGTTGCAATGGAAATAGACAAATCACAACCTCAAGCAAAGCATGCTTTGGACAAACTAAATGAAGTGCTCAAACTATGA
- Protein Sequence
- MALQFKKPKRNLRVRDSDGIYDNENEEKMDVDTVLKLPKSNKEKGLKKINTLSFGDELNECDDGEEFKVKKSSYSKKIKKQMNKEKMSKDKIENGKKSKVIMSDTTIPTVREKQTNFNSESVEKEIMLTGRAAEMAGYESSDEDDSYNSSTHKFSNPDQVKILLRNGQIPDAALIHAARKSRQQARDLGEDFIPISSQSHGESNIENEQITGRRLTREEDELEDSDDDGRIIMSGIVSQAEDRKKNLHITMADHTTSSDFQDPDELDEDNDWETQQIRKAVTGSQLAAAQQESASIASIYNNMIIQEETMIPTLVNQKARFLDSYVPQGLMSSMSPDDVINKIVEILSEMKEKRIPEKKYFEDMINEIPEVKNKIEMLKKRVPELAECFQFYQDLRGYVTDLVECLDEKIPILVGLEQRVCKLYEKRRTDLLNRRRQDVRDQADEASSNKLGNSSTSHTRSEEQQRRAAEREGRRIRRMRMRELKAISKHADGMSSDEEVPETDASAFRSQLEVIKSDSNLLMDDVLEQFASVDLVLKQMLEWKRKHPDTYVEAYVNVCLPNMMGPFVRIEMLTWNPLESDLMFENMLWYKSMQEYTMMSVNNVEQLSKDVDLELIPKIIEKVVLNKIDQMITSQWDPLSSKQTKHISCIIKHILDNYPTIDPDSKFLMLLLTNLVTRIRDAVDYDVFIPISSRQIMNTGRMNVFFQRQFNIAVKLLSNILYWHQIIEDAVLIDLAVNQILNRYLLTSIRTLQPLEAILKITMIARTLPSSWLSYGSNTPKELTSFLNQSKLVAMEIDKSQPQAKHALDKLNEVLKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01499641;
- 90% Identity
- -
- 80% Identity
- -