Basic Information

Gene Symbol
ct
Assembly
GCA_000648675.3
Location
NW:515054-543762[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.4e-27 7.9e-24 82.8 0.0 3 72 366 436 364 441 0.95
2 3 1.8e-31 1.1e-27 95.3 0.1 3 77 720 795 718 797 0.96
3 3 1.2e-31 7.2e-28 95.8 0.1 3 76 922 996 920 999 0.96

Sequence Information

Coding Sequence
ATGAAGATGAGCGGCTACCCGGCTTACATCTGTTTGTTCGGGCGTGATAGGGCGACACTCGCTGAAAAAGAAGTTTCCGCTTTAAAAGAACAATTAGCTGTAGCGAATCAAAACCAAAGCGATACAAAGATGGCGACTGTCACCCAAGGAACCGAAGAAATAATGAGCCGTTCTAATATTGAGCTAGAACTCTCGGCTAAAGATAAAGAGATCTCGCAGTTATTGGAAGATGTGCAGAGGCTGCAAAACAGCATAGGGAAATTGCAAGAAAATTCAGCCAATCAAATTGCGAGACTTGAAGAGGAGTTGGAGCATAAACGGCAGCATATATGCCGGCTAGAGGCGAGATTAGAGGCTCAGAAGGATTATAACGAACTGAAAAGGCAACTTAGTGGTCTAAGGCCTCCTGAGGAGACTTCGGCCAAGGCGGAGGAGCCCGAGAAAGCTAAATCTACGACGGATAATTCTGTTCCTAAGCCTGCTAGTACGCCATCTGAATCTCAAGGCGAAGTTCCTACCCTCCATAATGTAGAAACATTCGGCTCATTTTTGGGCGAAGAAATTGTAGCGAACTGGAGAAGGTCTTTGGAAAGAACTATGGTGTCTCAAGCCACGAGGCCGACACCGCCTCCAAATTCTTGGCCATCTCAATTCGatggtaaaGTGAAGACTGAAGAAAACAGGGAACGGGAAAACGACAAAGGAGTTTCCCCAGCAAGAGAATTACCACTGGTGAACGGTACTTCCAGTCCCGGTAATCACGAGCAAGAAGTTCCccacaataacaacaacaataataacaacaacaataacaacaacaacaacaacaataacaacaacaatccAATGTTGCCGAACGGTCTGTGCGGTTTGAACATCGGATTAAACAATAATGTCCTGAGTGGTGGAACGCCCCTGAATTTGAACGATGTGATAAAAAGTCCTTTCCGTTTTGATGAGAGGTCGCCGTTCAGATTCAGCGAAGACCCAAGCTGCATGGTCGGCAGGTTCGGCGAATCCCTAATACCCAAAGGCGATCCGATGGAGGCCAGGCTTCAGGAAATGCTCAGGTACAACATGGATAAGTACGCTAACCAGAACCTGGATACACTTCACATCGCACGACGGGTTCGAGAACTACTCTCGATACATAACGTCGGCCAGCGTCTCTTTGCAAAGTACGTCTTAGGACTTTCTCAGGGGACGGTTTCCGAGCTTCTATCGAAGCCTAAGCCTTGGGACAAGTTGACGGAAAAAGGGCGAGACTCCTACCGGAAGATGCACGCTTGGGCGTGCGACGACAACGCCGTTCTCTTGCTCAAGTCGCTCATCCCGAAAAAAGGTAAAGATGGTGGTGGTGGAATTGGTGTTTTGGCAAGAGGTTCTGAATCTGAGATGACAGAAGAAAGGATTGCACATATACTTAACGAAGCGAGTCATATGATGAAACCCCAAGCACCAGAGGATAGCCACAGCAATGACGATAGCAAATCACCCAACCACCCTCAGagTGCTGAATCGCCCCTTACGAGGGACAATTCGCAAAATCGGAGGttgaaaaagtatgaaaatgaTGATATCTCTCATGAACAGGTGATGAGGATATACCAGGAAGAGCTAGCCAAACTGATGGGAAGAAGACTGGAAGACCAGCCATTTCCAggaatggTGTTCCCACATTTCTTAAGCGGTGGTAGTGGTGAAGATGTGAGAATCGCTATGGATGCTTACCACCGAGAACTTGCCAAACTAAGCAGCAATAGTGGTGGTCTCCAGCACCCCCTTGCCGCCCTCCATGCCCAGAGTTTGTCTGCAGCACATAACGGTATTGCTCAAGATTTGTCTTTGCCAAAACAAGTTAAACGAGAAAAAAGCAATAATGAGGACGACAAAAAGGAAGATGATAGGCATGGTGGAAGTGCATTTTCTCTAGTGAGACCTAAAGTGGAACCCGGCTCGCCACTGGGGAACGTGATCCTACCTCCTGAAGATATGGGAGGAGGCTCTGGTACAGCAGCTGTGAGTCCACTGCAAAGGATGGCATCCATCACAAATGCGCTTATCTCACAACCACCATCACAACACCACCATTCCCCATCTCAAAGGCCCCTGAAGGCTGTTTTACCACCTATCACGCAACAACAGTTCGATCAATTCAATAATCTCAATACAGAAGAAATTGTGAGAAAGGTCAAAGAGCAACTAAGTCAATTTTCAATAAGCCAAAGGCTATTTGGTGAATCTGTTCTTGGTTTATCACAAGGGAGTGTTTCTGATTTACTAGCCAGGCCCAAACCATGGCACATGTTAACTCAGAAAGGAAGAGAGCCTTTTATCAGAATGAAAATGTTTCTCGAAGATGAAAATGCTGTCCATAAATTAGTTGCTTCACAATACAAAATTGCTCCGGAAAAATTGATGAGGACTGGAGGTTATGGTGTCAATGCCAGTAAGTTCATTTATTCTATTTCTCCATTGTGCAATTTCATAATCACAATGTTTATTCTAGCTGGTGGGCCACATTCAAAAGCTATTGCCGGAACATGTGGGAAATTTGGAACCAACGATGCATTTTTACACAATCCCACTATGCATATTCCTCATAGTGCACCAGCACCACCGCCAGTACCTGCGATCACACCTCCTGATATGAAGAAATGTACGATTCCTCCACAGCAGTGTCATACTCCAATGCAACAATACCCTGGCATCAAAAACCTCCATCATGTATCTCCTTCTGTATATGAAATGGCAGCACTAACACAGGACTTGGATACCCAgtcaataacaacaaaaatcaagGAAGCTTTGTTAGCCAATAACATAGGACAGAAGATATTTGGAGAAGCAGTATTAGGTTTGTCACAAGGTTCTGTTAGTGAACTCCTTTCCAAACCTAAACCCTGGCATATGCTGAGTATCAAAGGAAGGGAACCTTTCATCAGGATGCAGCTGTGGCTTTCTGACTCAAACAACATTGATAAACTTCAAGCTTTAAAGTCTGAGAGGAGGGAACTCAACAAGAGACGAAGAGGATCAGGTCAGCAAGACAATAGTAGTGACACTTCATCCAATGATACTTCTGAGTTCTACCACAGCAGTGCAGGAAGTCCACCATCGGCGAAAAAGCATAGAGTATTCTTTTCCGAAGAACAGAAGGAAGCGTTGAGGCTCGCTTTTGCTTTAGATCCATATCCCAGTTTAGCTACAATAGAATTTCTAGCGAATGAACTAAGCCTTGTGTCCCGCACAATTACCAATTGGTTTCATAACCATAGAATGAGACTGAAGCAGAGTCCTCAGGGAGAGACACTGAACAGAGAGGGGCAAGGCTCTGGTTTTGATCCTGTACAGTTTAGAATATTATTAAGCCAAAGGTTAGGACTTCCTTTGCCATTCGCTGGCCCATTTTTCCATTCAAACAGTGAAATGTCAAATATGATATCTAGGACTGATCTACCTTTGAGGGAACAAGGCTTAGATCTCTCGATTAAACATGAGTATGAAGGTGAAGACAACGAAAGCCATGTAGACTCTGAGGATTCGTTTTCTGGTGTTCCAGAAACAAGAGTTCCAGAACCAAGGATCTCAAGAAGAAAACCTGCAGCACCCCAATGGGTCAACCCAGACTGGCAACAAGAGCCGGAAGTGATTATTAATGGTGTGTGTGTGATGCAAACTGAAGACTATGATAGGGAAGGTCGTGAAGAAACAGTCAGAGTAGAACCTGTGCCAGTACCTGAAGAAAGGAGTGCTACGCCTGAAAGCACGCCTCAACCACCTCTGGAAGAGCCCAAATCTTCCCTTGCTGTGAAGCAAGAACTAAAGgaggaaaaatgggaaaatcaaTACTAA
Protein Sequence
MKMSGYPAYICLFGRDRATLAEKEVSALKEQLAVANQNQSDTKMATVTQGTEEIMSRSNIELELSAKDKEISQLLEDVQRLQNSIGKLQENSANQIARLEEELEHKRQHICRLEARLEAQKDYNELKRQLSGLRPPEETSAKAEEPEKAKSTTDNSVPKPASTPSESQGEVPTLHNVETFGSFLGEEIVANWRRSLERTMVSQATRPTPPPNSWPSQFDGKVKTEENRERENDKGVSPARELPLVNGTSSPGNHEQEVPHNNNNNNNNNNNNNNNNNNNNNPMLPNGLCGLNIGLNNNVLSGGTPLNLNDVIKSPFRFDERSPFRFSEDPSCMVGRFGESLIPKGDPMEARLQEMLRYNMDKYANQNLDTLHIARRVRELLSIHNVGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVLLLKSLIPKKGKDGGGGIGVLARGSESEMTEERIAHILNEASHMMKPQAPEDSHSNDDSKSPNHPQSAESPLTRDNSQNRRLKKYENDDISHEQVMRIYQEELAKLMGRRLEDQPFPGMVFPHFLSGGSGEDVRIAMDAYHRELAKLSSNSGGLQHPLAALHAQSLSAAHNGIAQDLSLPKQVKREKSNNEDDKKEDDRHGGSAFSLVRPKVEPGSPLGNVILPPEDMGGGSGTAAVSPLQRMASITNALISQPPSQHHHSPSQRPLKAVLPPITQQQFDQFNNLNTEEIVRKVKEQLSQFSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGGYGVNASKFIYSISPLCNFIITMFILAGGPHSKAIAGTCGKFGTNDAFLHNPTMHIPHSAPAPPPVPAITPPDMKKCTIPPQQCHTPMQQYPGIKNLHHVSPSVYEMAALTQDLDTQSITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDSNNIDKLQALKSERRELNKRRRGSGQQDNSSDTSSNDTSEFYHSSAGSPPSAKKHRVFFSEEQKEALRLAFALDPYPSLATIEFLANELSLVSRTITNWFHNHRMRLKQSPQGETLNREGQGSGFDPVQFRILLSQRLGLPLPFAGPFFHSNSEMSNMISRTDLPLREQGLDLSIKHEYEGEDNESHVDSEDSFSGVPETRVPEPRISRRKPAAPQWVNPDWQQEPEVIINGVCVMQTEDYDREGREETVRVEPVPVPEERSATPESTPQPPLEEPKSSLAVKQELKEEKWENQY