Basic Information

Gene Symbol
ct
Assembly
GCA_031894815.1
Location
JAVIWC010001198.1:1737582-1756591[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.3e-27 3e-23 82.9 0.0 3 72 375 445 373 450 0.95
2 3 1.8e-31 4.1e-27 95.3 0.1 3 77 729 804 727 806 0.96
3 3 3.1e-31 7.1e-27 94.5 0.0 3 76 913 987 911 990 0.96

Sequence Information

Coding Sequence
ATGTCATCCCGAGTCAACATTCACGTATTAAGGGTGTTGGACGTCGTCATCGTTCTGGCGATCATCCCCAGAGCGACGCTGGCTGAGAAAGAGGTGTCAGCGCTCAAGGAACAGTTGGCTGTGGCTAACAATCAAAACCAAAGTGATAAGAAGATGGCAACCGTAACCCAAGGGACTGAGGAAATCATGAGCCGCTCCAATATCGAATTAGAACTCTCCGCTAAGGATAAAGAGATATCTCAGCTGATTGAGGATGTCCAACGTCTCCAAAATAGTATAGGCAAATTGCAAGAAAATTCCGCCAATCAAATAGCGCGGCTTGAAGAAGAACTTGAGCATAAGAAGCAGCACATATGCCGGCTTGAAGCTCGCCTAGAAGCTCAAAAAGATTATAGCGAATTGAAAAGGCAACTAAGCGGGCTGAGGAAAACGGAGGACACGACATCCAGTACACCTGAGGAGtccgaaaaaatcaaaccaactGCTGAGAGCCCTCTGCCCAAACCTCCACCAACCAGCACGCCTACTGACGTCCAAGgAGACGTACCTACGTTGCATAATGTGGAGACATTTGGGTCTTTCCTAGGAGAAGAAATCGTTGCAAACTGGAGGCGATCGTTGGAGCGGACTATGGTGTCTCAAGCGGCCCGACCAACACCACCCCCTGCATCTTGGCCACCTCATTACGAAGGTAAAGTGAAGGCTGAAGAGAGCCGTGAGAGGGAGGGAGACAAGGGAGTATCTCCCGCAAGGGAACTTCCTCTTGTGAACGGGGCGTCAAGTCCTGCTAACAATGAGCAAGAAGTCCCTCTCAACAACAACAGtacaaataataacaacaataacaccAGCactaacaacaacaataacccTATGCTACCCAATGGGCTGTGTGGGCTTAATATAGGACTCAACAACAATGTCTTGAGTGCTGGAGCACCGCTCAATTTGAACGATGTCATGAAGAGCCCATTCCGTTTTGATGAGAGGTCCCCCTTCAGGTTCGGCGAGGATCCGGGATGTATGGTTGGAAGGTTTGGCGAATCCCTGATTCCTAAAGGCGATCCCATGGAAGCAAGGCTTCAGGAAATGTTGAGGTACAATATGGACAAGTATGCAAACCAGAATCTAGACACGTTGCATATTGCTCGTCGTGTACGGGAATTACTATCAATACACAACGTTGGGCAGAGATTATTTGCCAAGTATGTGCTTGGGCTTTCGCAAGGAACAGTTTCTGAACTTCTATCAAAACCTAAACCTTGGGATAAACTGACAGAAAAAGGAAGGGATTCCTACAGAAAGATGCACGCTTGGGCTTGCGACGAAAACGCCGTGCTCCTACTCAAGTCATTGATCCCTAAAAaagGAAAAGATGGTTCGAGCATCGGCGTGCTGAACAGGGGACCGGAAAGTGAAATGACTGAAGAAAGAATAGCGCATATTCTGAGTGAAGCCAGTCATATGATGAAGCCGCATCCTCACGAGGACAGCCGGAGCAATGATGATAGCAAATCACCTAACCATCCCCAGAGCTCCGAATCACCACTGGGACGAGACAACTCCCAGAATCGACGGCTGAAGAAATACGAAAATGACGATATATCACAGGAACAGGTGATGAGGATATACCAGGAAGAGTTGGCTAAGTTGATGGGTCGTACCTTGGAAGACCGCCCATTTACCGGGTTGGTCTTCCCTCATTTCCTTACTGGTGGAAGTGGAGAAGATGTGCGGCTAGCCATGGATGCATATCAGCGGGAGTTTGCTAAACTCAATAGCAATAGTGGAGCTGGCTTGCAACACCCTTTGGCAGCTCTTCATGCCCAGAGTTTATCTGCAGCTCATAACGGTATAGCTCAAGATTTGTCTTTACCCAAACACGTTAAAAGAGAAAAGACCAATAATGAGGACGAGAAAAAGGAAGATGATAGGCATGGTGGAAGTGCATTTTCTCTTGTGAGACCAAAAGTTGAACCTGGTCCTCCTTTAGGGAACGTGATCCTTCCACCTGAGGACATTGGAGGTGGATCGGGTGCAGCTGCTGTGAGCCCTTTGCAGAGAATGGCGTCTATCACGAACGCTCTCATTTCGCAGCCCCCATCGCAACACCATCATTCTCCATCTCAAAGGCCTCTGAAAGCTGTTCTCCCACCGATAACTCAGCAACAGTTTGATCAATTCAACAATTTGAATACTGAAGAAATAGTTCGTAAGGTTAAAGAACAATTGAGCCAATTCTCAATCAGTCAGAGGTTATTCGGAGAATCTGTACTTGGTCTTTCACAAGGAAGCGTCTCTGACTTGCTTGCTAGGCCGAAACCTTGGCACATGCTCACACAAAAAGGACGAGAGCCTTTCataagaatgaaaatgttcCTAGAAGATGAAAATGCTGTGCATAAACTGGTTGCGTCTCAATATAAAATTGCACCTGAAAAGTTGATGCGTACTGGAGGGTACGGAGTAAATCCTGCCGGAGGTCCCCACTCCAAAACAATGGCTGCAACTTGTGGTAAATTTGGATCAAATGAAGCTTTTCTTCATAACACGCCTATGCACATGCAACATAGCGTGCCTACAGCGCCTCCACCAGTACCACCTCTCACTCCTCCAGACATCAAGAAATGTACCATTCCTTCTCAGCAGTGCCACACAAACCCCATGCCTCAGTACCCCAGCGTCAAGAACTTGCACCATGTTTCGCCTACTGTGTATGAGATGGCTGCATTAACACAAGATTTAGATACACAGTCAATTACTACAAAGATCAAGGAGGCACTATTAGCCAATAATATAGGCCAAAAGATTTTCGGTGAAGCTGTTCTTGGTCTATCACAAGGGTCTGTTAGTGAACTCCTTTCAAAACCGAAACCGTGGCATATGCTAAGCATAAAAGGAAGGGAACCTTTCATCAGGATGCAACTGTGGCTTGCTGATTCGAATAACATTGATAAACTGCAGGCGATCAAGTCAGAAAGGCGTGAGCTCAATAAAAGGCGTCGAGGTTCAGGCCAGCAAGACAATAGCAGTGACACATCATCGACTGATACATCAGAGTTCTATCATAGTAGTGCCGGAAGCCCACCCTCTGCGAAAAAACACAGGGTCTTTTTCtcagaagaacaaaaagaagcattgaGACTAGCTTTTGCTCTGGACCCATACCCGAGTTTGGCAACAATTGAGTTCTTAGCTAATGAGTTGAGTTTAGTATCACGCACAATAACTAATTGGTTTCATAACCATAGGATGCGACTGAAGCAAAGTCCTCAAGGTGAACAACTCAACCGAGAGGGACAAGGATCGGGATTTGATCCTATCCAATTTAGAATACTCCTTAGCCAACGGCTAGGTATACCTTTGCCTTTTGGTAATACGCCCTTTTTCCAGTCTAATACTTCAGAAATCCCAAGCATAAGACCGGACGCTCCTCTAAGAGGAGAACAAGGGTTAGATCTCTCTATCAAACATGAGTACGAAGGAGATGACAATGAAAGTCACGCTGATTCTGAAGACTCATTTTCCGGAGTACCTGAAACCCGAGTTCCTGAACCAAGAATCTCCAGAAGGAAACCAGCTGCTCCTCAGTGGGTTAACCCCGACTGGCAACAAGAACCTGAAGTGATTATCAACGGCGTGTGTGTTATGCAAACGGAAGACTTTGACAGGGAAGGACGGGAAGAGACAGTTAGAATCGAACCAACACCAGTCCCTGAAGATCATAGTGCAACACCAGAACCATCGAGTGACCCCACTGCTGAGGAATCTTCCAAACCTTCAGTTTCTGTGAAGCaagaaataaaagatgaaaaatgggAGAATCCTTACTAG
Protein Sequence
MSSRVNIHVLRVLDVVIVLAIIPRATLAEKEVSALKEQLAVANNQNQSDKKMATVTQGTEEIMSRSNIELELSAKDKEISQLIEDVQRLQNSIGKLQENSANQIARLEEELEHKKQHICRLEARLEAQKDYSELKRQLSGLRKTEDTTSSTPEESEKIKPTAESPLPKPPPTSTPTDVQGDVPTLHNVETFGSFLGEEIVANWRRSLERTMVSQAARPTPPPASWPPHYEGKVKAEESREREGDKGVSPARELPLVNGASSPANNEQEVPLNNNSTNNNNNNTSTNNNNNPMLPNGLCGLNIGLNNNVLSAGAPLNLNDVMKSPFRFDERSPFRFGEDPGCMVGRFGESLIPKGDPMEARLQEMLRYNMDKYANQNLDTLHIARRVRELLSIHNVGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDENAVLLLKSLIPKKGKDGSSIGVLNRGPESEMTEERIAHILSEASHMMKPHPHEDSRSNDDSKSPNHPQSSESPLGRDNSQNRRLKKYENDDISQEQVMRIYQEELAKLMGRTLEDRPFTGLVFPHFLTGGSGEDVRLAMDAYQREFAKLNSNSGAGLQHPLAALHAQSLSAAHNGIAQDLSLPKHVKREKTNNEDEKKEDDRHGGSAFSLVRPKVEPGPPLGNVILPPEDIGGGSGAAAVSPLQRMASITNALISQPPSQHHHSPSQRPLKAVLPPITQQQFDQFNNLNTEEIVRKVKEQLSQFSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGGYGVNPAGGPHSKTMAATCGKFGSNEAFLHNTPMHMQHSVPTAPPPVPPLTPPDIKKCTIPSQQCHTNPMPQYPSVKNLHHVSPTVYEMAALTQDLDTQSITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLADSNNIDKLQAIKSERRELNKRRRGSGQQDNSSDTSSTDTSEFYHSSAGSPPSAKKHRVFFSEEQKEALRLAFALDPYPSLATIEFLANELSLVSRTITNWFHNHRMRLKQSPQGEQLNREGQGSGFDPIQFRILLSQRLGIPLPFGNTPFFQSNTSEIPSIRPDAPLRGEQGLDLSIKHEYEGDDNESHADSEDSFSGVPETRVPEPRISRRKPAAPQWVNPDWQQEPEVIINGVCVMQTEDFDREGREETVRIEPTPVPEDHSATPEPSSDPTAEESSKPSVSVKQEIKDEKWENPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00339686;
90% Identity
iTF_00883671;
80% Identity
iTF_00386180;