Basic Information

Insect: Chymomyza procnemis
Gene Symbol: -
Assembly: GCA_035046065.1
Location: JAWNOJ010000026.1:57983109-57987155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00013 0.0094 16.4 0.4 1 23 137 160 137 160 0.96

2 14 0.0027 0.19 12.2 3.8 2 23 209 231 205 231 0.90

3 14 0.0057 0.41 11.2 0.2 1 23 340 363 340 363 0.93

4 14 0.00089 0.064 13.7 1.0 2 23 412 434 411 435 0.95

5 14 0.0044 0.31 11.6 1.3 1 23 494 517 494 517 0.90

6 14 1.9 1.3e+02 3.3 0.1 2 14 536 548 535 560 0.85

7 14 0.0025 0.18 12.3 1.3 2 23 568 590 568 590 0.96

8 14 0.0014 0.099 13.1 0.0 1 23 675 698 675 698 0.95

9 14 0.00013 0.0094 16.4 0.3 1 23 736 759 736 759 0.93

10 14 0.0011 0.078 13.5 2.2 2 23 809 831 808 831 0.97

11 14 0.0017 0.12 12.8 2.0 1 23 899 922 899 922 0.92

12 14 0.15 11 6.8 1.4 1 21 974 994 974 995 0.95

13 14 0.0022 0.16 12.5 0.1 3 23 1045 1066 1044 1066 0.97

14 14 2.8 2e+02 2.8 0.6 1 14 1084 1097 1084 1108 0.68

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00013	0.0094	16.4	0.4	1	23	137	160	137	160	0.96
2	14	0.0027	0.19	12.2	3.8	2	23	209	231	205	231	0.90
3	14	0.0057	0.41	11.2	0.2	1	23	340	363	340	363	0.93
4	14	0.00089	0.064	13.7	1.0	2	23	412	434	411	435	0.95
5	14	0.0044	0.31	11.6	1.3	1	23	494	517	494	517	0.90
6	14	1.9	1.3e+02	3.3	0.1	2	14	536	548	535	560	0.85
7	14	0.0025	0.18	12.3	1.3	2	23	568	590	568	590	0.96
8	14	0.0014	0.099	13.1	0.0	1	23	675	698	675	698	0.95
9	14	0.00013	0.0094	16.4	0.3	1	23	736	759	736	759	0.93
10	14	0.0011	0.078	13.5	2.2	2	23	809	831	808	831	0.97
11	14	0.0017	0.12	12.8	2.0	1	23	899	922	899	922	0.92
12	14	0.15	11	6.8	1.4	1	21	974	994	974	995	0.95
13	14	0.0022	0.16	12.5	0.1	3	23	1045	1066	1044	1066	0.97
14	14	2.8	2e+02	2.8	0.6	1	14	1084	1097	1084	1108	0.68

Sequence Information

Coding Sequence: ATGGAGGGTATGGACTTGTGGACTTCAATGTTCTCGGCTGACATTGTGGAGGGTGAAAATAGCTTAAATGAACAATATGATGAACATGCCACTGCCTTGCCCATAGACGccgaagaagaagaagaaggcGATGATGAAGACAATGATGCTGCGatgtataaaaaaaccaagaaacgTGTAGAGCCTGATGATGATGCCAtatttaatttcgatttaGAACCAATTGTGAGCATTTCCGAAGCCCCTCCGCCACCTCAACAGACAGCACCTTCGCCGCCACCGCTGCGGTTAATGCCTCCTAAAGCGGCCGCAGCACCTACACCAGTTAACGCATCACGACCAACAACATCGCAAATTAATGCCACTGATGAGCATGGAGTACCTATAAACTACGAATTGGGAGTGATTTATATATGCCCCGCCTGTGGTATGGAGTTTCGTTTGCAGGATCATTGGAAGCGTCATATGAATCAAATCCATCAGTACAATACCAGAAGGGgcttaaattttgtagctaTTGATAAGCTCTATCATCGCTGTCTCGAATGTAATAAGCACATTGCTATGCACAGCCGAGAGAATCTCTTAAAGCATAAGTTTACGCATTTGCCATTTCGCTGCACCAAATGCTACATCTGCAAACGCGAGTACAAATATAGGCAAGACTTAATGGTTCATTTGCGAATGACCCATTGCGATGAGGTGGTAGCCATGATGCGTGGAGCTGATCCTAGATTGGGCAAAAAAACTCGAGTACGTGAACCACGTACCGAGGAGCAAGAGAGAAATATTGCGAAACGCGGCCGCTACGAAGAGGATGGTGTagaagttaaaaatgaaatgattgATGCAGATGTGGAGTCCATGTATCCTGAGCCTACTTATGGGGATGACGAGCAAAGTCGCAGCTCCTCACatagcgcaaaaaaaaagcgtatgAGTGCGCAAAATCCTGTAGATGGCAGCGGAAATGGAGCCGGATCCAATGCATTGGATGTGTGTGAAGATTACATACACTATATGTGTCCAGATTGCGGCGCAGACTGCGACACAAAAAGTCAGTGGGATCAGCATATCGAATTCGTGCATGACTATGTCAGTCGACGTGGACTCAATTTTCGCAGTGTGGATAAGCGAATGCAGTGTATGGAATGTGATCAGTTTGTGCATTCAACCGCCATTAAAGTGTTGCGTCAGCATAAATTCAGCCATTTGCCTCATCCGGAATGGTTGCGCTGTAAGCTCTGTTATAAGGCCTTTGTTGACCAACAGGAACTGGTAGATCATTTGCTTAAACAACATCACATGAATACGCTTGTGCAAGAAACTCCTAGCAGTTTGGATGAAGCGGAAGAAAATGACAATGGTAATGGATATGATGATGATTCTGAGCAGGTGCCAATTTGGGATGAAATACCACGCCGTGGCACCGGTGGACGTCACATAGCTGTCGATGATATCTTTGAGCCTCATATTGACTACGTTTGTCCACAATGCCGCAAGGAGTTTAAGGAAAAAAAGCAATGGCGGATGCATGTGGTGCATGTGCACGGAATGAACGACTTGGCCAAACTTAACTTTGAAGTTATAAACGATCGTCAGCTGAAATGCACGGAATGCGACAAAATCATCACTAATGCTTATGGCATACAAAATGCGCAACAGCATCGTATCACCCATCTGCCGCATAAGGCGTTCGCACGCTGTCGCAAGTGCCTGAAATCCTACACGGACCGAAAGGGACTGGTAAAACACTTAGCCACTTACCATGGCGTTGGCTATGAATCGCGTAAAGTTCATGGTGTGCTGCCAGCGCCAAAGCAGCCGCGCAAACAGATTGTCACTATAGCAAATGAAACATATGAGATTATTTATTTGGACGATGAAGATGCAAGCGTTCCCAACGAGGACAATGATTTTGGGGAGCAAATGCAGGACGAGGATGAGATTATTATGCCCAGCAGTAAGAATAGCAGTGCCAATTATGGGCGCCCGTATACTTCTTCTGCAACCTCCAATCGGTATAAATGTGTTGATTGCGGCTCGCTTTTTGCAACACAGCCAGCGCTCAAGGCGCATATAAGCGAAGAGCATGACTTTACCGATAACCAATACAGCGCTAAGAAGTTTGACAATGCAGAGCCAATTGACTCTATGGCGGGTGTAAAGGCTGGCTCCTGTCCGACCATTGAAAAGAACTACATATTCCTTTGTCCTTCCTGTGGCAAAGAGTATAAAACGCAGTTTGAGTGGCGGCGGCACATTAATGAAGCCCACAACTTTGACAAGCGCCAGTATCTGAATATGCGGCAACTGGACAAATATAGATATCAGTGCACGCAATGTAAGGATATTGTGTGCAACTCAAAGTTAAAAGGCTTGCAGGATCATCATTTTCGTCATTTACCCTATCGCCTTTATTTAAAGTGCTTGGTGTGCGGTACCTGCTACAATCACAAACCCAACATTGCGGCTCACTTGCGTACGCGACATAATATACTCGAACGCGATCTTCCCGAACGCGAGCCATACTTAAATACTAATCGCCAGCCAAAGGACTCACCGGAGGCAGCTTCTTCCTCAGGTCGCTCTTTGAAACCCAATCCTGGCCAATTGCCCATGCGACCAGCTGGTTTAAACACGTTGGAGGATAGCATCAGCTATCACAACGCCGTGGACCTAGACTTTATTACCTACTACTGCCCAAAATGCAATAAGAACTTTGATTCGCATGCCTTCTGGCGCAAACACATCGTGGAGCAACATAACTTTAATTGTCGCGAGGGCCTAAACTTCCGTCAAATTGACAACCATCATTATTTGTGCCTGGAGTGCTATAAACGCGTTACTGTAACGCACACGAAGGGCGCTATTGGACAATTGCAGTCGCACAAGTTCCGTCACTTGCCATATCGTTCCTTTAAATGTTTGAGCTGCAATGGCGAGTTCGTGCGCAAACAAATGTTCTTTAAGCATTTGAATAGAGATACAAATCGCTGTGATACCAAGCCTCACAGCCTTGATGGTCAAAATGATGAAGACGACACAGTTGCTGATGGAGAGCATGTGCCAAGGAGCGGAATTAGTAAAGCAGATTATGCAGATATTGATCCCAGCACTTATACATTGCTTTGCCCACAATGTGGCGATTCGTTTAACAATAAGGCTTCGTGGCGAGAGcacattaatatttatcatGCACTGGGCAAGCGTGAGTCCTTGTGTCTAAATTTAGTGGGTGAATCGACGTATCAGTGTGTCGAGTGTAATGAAACACTTAACACGAACAAGGTGCGCGAGTTGCAACAGCATCGATTTAAACATTTACCTTATGCTGCCTATATACGTTGCCAACTGTGCGTGGCGCAAGATAGCGAAGATGACACCCAAGCAGCTGGTCTGCATAGCTTAGAagagctgcagcagcacattCGGGAACGTCATCCTGCAATAGCTGAGGATGagcgaaaaatgaaaatgctgctGCAGGAGGATGATGCAGAGCAAGATGAAGACGAACAGCAGCCGCCGCAGTTAGATGAAGAGGACGATAGCATGCCGCCTGCAAATGATACAAGTGGTCCTTATATGCCATTACCTCCGCATTTGTATGAAGATGCGGACGATATGGACTTTGATGAACAGTATCTGCTAGgctaa
Protein Sequence: MEGMDLWTSMFSADIVEGENSLNEQYDEHATALPIDAEEEEEGDDEDNDAAMYKKTKKRVEPDDDAIFNFDLEPIVSISEAPPPPQQTAPSPPPLRLMPPKAAAAPTPVNASRPTTSQINATDEHGVPINYELGVIYICPACGMEFRLQDHWKRHMNQIHQYNTRRGLNFVAIDKLYHRCLECNKHIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMTHCDEVVAMMRGADPRLGKKTRVREPRTEEQERNIAKRGRYEEDGVEVKNEMIDADVESMYPEPTYGDDEQSRSSSHSAKKKRMSAQNPVDGSGNGAGSNALDVCEDYIHYMCPDCGADCDTKSQWDQHIEFVHDYVSRRGLNFRSVDKRMQCMECDQFVHSTAIKVLRQHKFSHLPHPEWLRCKLCYKAFVDQQELVDHLLKQHHMNTLVQETPSSLDEAEENDNGNGYDDDSEQVPIWDEIPRRGTGGRHIAVDDIFEPHIDYVCPQCRKEFKEKKQWRMHVVHVHGMNDLAKLNFEVINDRQLKCTECDKIITNAYGIQNAQQHRITHLPHKAFARCRKCLKSYTDRKGLVKHLATYHGVGYESRKVHGVLPAPKQPRKQIVTIANETYEIIYLDDEDASVPNEDNDFGEQMQDEDEIIMPSSKNSSANYGRPYTSSATSNRYKCVDCGSLFATQPALKAHISEEHDFTDNQYSAKKFDNAEPIDSMAGVKAGSCPTIEKNYIFLCPSCGKEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNILERDLPEREPYLNTNRQPKDSPEAASSSGRSLKPNPGQLPMRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEQHNFNCREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLSCNGEFVRKQMFFKHLNRDTNRCDTKPHSLDGQNDEDDTVADGEHVPRSGISKADYADIDPSTYTLLCPQCGDSFNNKASWREHINIYHALGKRESLCLNLVGESTYQCVECNETLNTNKVRELQQHRFKHLPYAAYIRCQLCVAQDSEDDTQAAGLHSLEELQQHIRERHPAIAEDERKMKMLLQEDDAEQDEDEQQPPQLDEEDDSMPPANDTSGPYMPLPPHLYEDADDMDFDEQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337057;
90% Identity: iTF_00336261;
80% Identity: -