Basic Information

Insect: Chymomyza amoena
Gene Symbol: -
Assembly: GCA_037043745.1
Location: JBAMAX010002436.1:37247-41885[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00062 0.057 14.3 0.4 1 23 136 159 136 159 0.96

2 14 0.0029 0.27 12.2 3.8 2 23 208 230 204 230 0.90

3 14 0.0023 0.21 12.6 0.5 1 23 342 365 342 365 0.93

4 14 0.06 5.6 8.1 2.1 2 23 414 436 413 437 0.95

5 14 0.0048 0.45 11.5 1.3 1 23 496 519 496 519 0.90

6 14 2 1.8e+02 3.3 0.1 2 14 538 550 537 562 0.85

7 14 0.0026 0.25 12.3 1.3 2 23 570 592 570 592 0.96

8 14 0.00089 0.082 13.8 0.1 1 23 677 700 677 700 0.95

9 14 0.00014 0.013 16.4 0.3 1 23 738 761 738 761 0.93

10 14 0.0011 0.11 13.5 2.2 2 23 811 833 810 833 0.97

11 14 0.0032 0.3 12.1 3.8 1 23 899 921 899 922 0.94

12 14 0.16 15 6.8 1.4 1 21 974 994 974 995 0.95

13 14 0.0023 0.22 12.5 0.1 3 23 1046 1067 1045 1067 0.97

14 14 5.1 4.8e+02 2.0 0.6 1 13 1085 1097 1085 1109 0.62

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00062	0.057	14.3	0.4	1	23	136	159	136	159	0.96
2	14	0.0029	0.27	12.2	3.8	2	23	208	230	204	230	0.90
3	14	0.0023	0.21	12.6	0.5	1	23	342	365	342	365	0.93
4	14	0.06	5.6	8.1	2.1	2	23	414	436	413	437	0.95
5	14	0.0048	0.45	11.5	1.3	1	23	496	519	496	519	0.90
6	14	2	1.8e+02	3.3	0.1	2	14	538	550	537	562	0.85
7	14	0.0026	0.25	12.3	1.3	2	23	570	592	570	592	0.96
8	14	0.00089	0.082	13.8	0.1	1	23	677	700	677	700	0.95
9	14	0.00014	0.013	16.4	0.3	1	23	738	761	738	761	0.93
10	14	0.0011	0.11	13.5	2.2	2	23	811	833	810	833	0.97
11	14	0.0032	0.3	12.1	3.8	1	23	899	921	899	922	0.94
12	14	0.16	15	6.8	1.4	1	21	974	994	974	995	0.95
13	14	0.0023	0.22	12.5	0.1	3	23	1046	1067	1045	1067	0.97
14	14	5.1	4.8e+02	2.0	0.6	1	13	1085	1097	1085	1109	0.62

Sequence Information

Coding Sequence: ATGGAAGGTATGGACTTGTGGACTTCAATGTTCTCGGCCGACTTTGTGGAGGGTGAAAATAGTTTAAACGAACAATATGATGAACATGTCACTGCCTTGCCCatagacgctgaagaagaagatgaagacaATGATGCTGCGCCGTATAAAAAAACCAAGAATAGAGTAGAGCCTGATGATGATGCCATATTTAATTTCGAATTAGAACCAATTGTGAGCATTTCCGAAGCACCACCATTACAGACAGCACCCTCGCCGCCGCCGCTTCGGTCAATGCCTCCTACAGTGGCCGCAGCGCCAGCCCCAGTAACAGCATCGACATCATTGCCTGTACGACCAACAACATCACAAATCAATGCCACAGATGAGCACGGAGTCCCTATCAACTACGAATTGGGAGTGATTTATATATGTCCCGCCTGCGGTATGGAGTACCGCTTACAGGATCATTGGAAGCGTCATATGAATCAAATCCATCAGTACAATACTCGAAGGGGCTTAAACTTTGTCGCCATTGATAAGCTCTATCACCGCTGCCTCGAATGCAATAAACACATTGCTATGCATAGCCGAGAGAATCTCTTGAAGCACAAATTCACGCATTTGCCATTTCGCTGCACCAAATGCTATATCTGCAAACGCGAGTACAAATACAGGCAAGACTTAATGGTTCATTTGCGTATGACCCACTGCGATGAGGTTGTAGCCATGATGCGGGCCGGCGATCCTAAATTGGGCAAAAAGACTCGAGTACGTGAGCCACGTACAGAGGAGCAGGAGAGGAATATTAGCAAGCATGGCCTCAGTGGTAACTACGAAGAAGATGGTGTTGAAGTAAAAAACGAAATGGTTGATCCAGATATGGACTCCATGCATCCTGAGGCTGCTTACATAGATGATGAGCAAAGTCGCAGCTCCTCTCAAGGAGCAAAAAGGAAGCGTATGAATGCGCTTAATTCTACAGATGGAGGGGGAAATGGCGCTGGATCAAATGCGTTAGATGTGTGCGAAGACTATATACACTACATGTGCCCAGATTGCGGCACCGACTGCGACACTAAAAGTCAATGGGATCAGCATATTGAATTTGTGCACGACTATGTCAGCCGGCGGGGACTCAATTTTCGCAGTGTGGATAAGCGAATGCAGTGTATGGAGTGTAATCAGTTTGTGCATTCCACCGCCATTAAAGTGTTGCGTCAGCATAAATTCAGCCATTTGCCTCAACCGGAATGGTTGCGTTGCAAGCTCTGCTATAAAGCCTTTGGAGACCATCAGGAACTGGTAGGGCATTTACTTAAACAACATCACTTGAATACTCTAGTGCAAGACGCACCTGGCAGCGTGGATGAAACCGAAGAAAATGACAATGGTAACGGCTATGATGATGACTCTGAGCAGGTGCCAATTTGGGACGAAATACCGCGTCGTGGTACCGGTGGACGTCATATAGCTGTCGATGATATCTTTGAACCTCACATTGACTACGTCTGTCCACAGTGCCGCAAAGAGTTTAAGGAAAAGAAGCAATGGCGCTTGCATGTAGTTCATGTACACGGCATGAACGACTTGGCAAAACTTAACTTTGAAGTCATAAACGATCGTCAGCTTAAATGCACGGAATGCGACAAAATCATAACTAATGCTTATGGCATTCAAAATGCTCAACAACATCGCATCACACACCTGCCTCATAAGGCATTTGCACGCTGTCGCAAGTGTCTGAAATCCTACACGGATCGAAAGGGTCTGGTTAAGCATTTAGCCACCTATCATGGCGTGGGCTATGAGTCGCGAAAGGTACATGGTGTGCTACCACCGGCAAAGCAGCCACGCAAACAGATTGTTACTGTAGCAAATGAAACATATGAGATTATTTATCTGGATGACGAAGACTCAACTGGTCCTAATGAGGATAATGATTTTGGCGAGCAAATGCAGGAGGAAGATGAGATAATTATGCCCAGCAGCAAGAATATCAGCGGCAACTATGGACGCCCTTATACTTCTTCTGTTTCTTCCAATCGGTACAAATGTGTTGACTGCGGCTCGCTTTTTGCCACTCAGCCATCACTCAAAGCGCACATAAGCGAGGAGCACGATTTTACAGATAACCATTACAGCGCCAAGAAGTTTGACAATGCAGAGCCAATTGACTCTATGGCAAGTGTGAAGGCTGGCTCTTGTCCGACCATTGAAAAGAACTATATTTTCCTTTGTCCATCCTGTGGCAAAGAGTATAAAACACAGTTCGAGTGGCGAAGGCATATTAATGAAGCCCACAATTTTGACAAACGGCAGTATCTTAACATGCGCCAACTGGACAAGTATAGATATCAGTGCACGCAGTGTAAGGATATTGTTTGCAACTCGAAGTTAAAGGGTCTGCAGGATCATCATTTCCGTCATTTACCCTATCGCCTCTATTTAAAGTGCTTGGTTTGCGGCACCTGCTACAATCACAAGCCCAATATAGCGGCTCACTTGCGCACGCGTCATAATATATTAGAGCGCGATCTTCCAGAACGCGAGCCATACTATAACCGCCAGCCAAAGGATTCGCCAGAGGCGGCTTCGTCCTCTGGTCGTTCCCTGAAACCCAATCCTGGCCAACTGCCTATGCGACCAGCTGGTTTGAACACTCTAGAGGATAGCATTAGCTATCATAACGCCGTAGACCTAGATTTCATTACCTACTACTGCCCCAAATGCAATAAGAACTTTGACTCGCACGCCTTCTGGCGCAAACACATTGTAGAACATCATAATTTTAATTGCCGCGAGGGCCTAAACTTTCGCCAGATTGACAACCATCATTATTTGTGCTTGGAGTGCTATAAACGCGTAACAGTTACCCACACCAAGGGCGCCATTGGTCAATTGCAGTCACACAAGTTCCGCCACTTGCCATATCGttcttttaaatgtttaagCTGCAATGGTGAGTTCGTGCGCAAACAAATGTTCTTTAAGCATTTAAATAGAGACACAAATCGCTGCGATACCAAGCCTCTGAGCAGTGATGGGCAAATGAATGATGAAGACGAAACAGTTGCTGATGGGGAGCATTCGCAAAGGGTCGGAGTTAGTGAAGCAGATTATGCGGATGTTGATCCCAGCACTTATACCTTGCTATGCCCACAATGTGGTGATTCGTTTAACAATAAGGCTTCTTGGCGAGAGCACATTAATATTTATCATGCACTGGGCAAACGTGAGTCTTTGTATCTTAACAAAGTCGGTGAATCAATGTACCAGTGCGTTGAGTGTAATGAAACGATAAATACGAACAAGGTACGCGAGTTGCAACAGCATCGCTTCAAACATTTGCCCTATGCCGCCTATATACGTTGCCAATTGTGCGTGGCGCAAGATGGCGAGGATGATTCCACAGCAGCTGGTCTGCACAGCTTAGTAGAGCTGCAGCAGCACATACGCGACCGCCATCCTGCGATGGCGGAAGATGAGCGGAAAATGAAATTGCTTCTGCAGGAAGATGAACCAGAGCCAGATGAAgacgagcagcagcagcagcagctggatGGAGAGGAGGATAGCATGCCGCCTGCAAATGAGCCAACTGGCCCTTACATGCCGTTACCTCCGCATTTGTATGAAGAAGTAGAAGACGTTGACTTTGATGAACAGTATCTGCTAGGCTAA
Protein Sequence: MEGMDLWTSMFSADFVEGENSLNEQYDEHVTALPIDAEEEDEDNDAAPYKKTKNRVEPDDDAIFNFELEPIVSISEAPPLQTAPSPPPLRSMPPTVAAAPAPVTASTSLPVRPTTSQINATDEHGVPINYELGVIYICPACGMEYRLQDHWKRHMNQIHQYNTRRGLNFVAIDKLYHRCLECNKHIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMTHCDEVVAMMRAGDPKLGKKTRVREPRTEEQERNISKHGLSGNYEEDGVEVKNEMVDPDMDSMHPEAAYIDDEQSRSSSQGAKRKRMNALNSTDGGGNGAGSNALDVCEDYIHYMCPDCGTDCDTKSQWDQHIEFVHDYVSRRGLNFRSVDKRMQCMECNQFVHSTAIKVLRQHKFSHLPQPEWLRCKLCYKAFGDHQELVGHLLKQHHLNTLVQDAPGSVDETEENDNGNGYDDDSEQVPIWDEIPRRGTGGRHIAVDDIFEPHIDYVCPQCRKEFKEKKQWRLHVVHVHGMNDLAKLNFEVINDRQLKCTECDKIITNAYGIQNAQQHRITHLPHKAFARCRKCLKSYTDRKGLVKHLATYHGVGYESRKVHGVLPPAKQPRKQIVTVANETYEIIYLDDEDSTGPNEDNDFGEQMQEEDEIIMPSSKNISGNYGRPYTSSVSSNRYKCVDCGSLFATQPSLKAHISEEHDFTDNHYSAKKFDNAEPIDSMASVKAGSCPTIEKNYIFLCPSCGKEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNILERDLPEREPYYNRQPKDSPEAASSSGRSLKPNPGQLPMRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEHHNFNCREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLSCNGEFVRKQMFFKHLNRDTNRCDTKPLSSDGQMNDEDETVADGEHSQRVGVSEADYADVDPSTYTLLCPQCGDSFNNKASWREHINIYHALGKRESLYLNKVGESMYQCVECNETINTNKVRELQQHRFKHLPYAAYIRCQLCVAQDGEDDSTAAGLHSLVELQQHIRDRHPAMAEDERKMKLLLQEDEPEPDEDEQQQQQLDGEEDSMPPANEPTGPYMPLPPHLYEEVEDVDFDEQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337057;
90% Identity: iTF_00338686; iTF_00337862; iTF_00339424;
80% Identity: -