Basic Information

Insect: Chymomyza caudatula
Gene Symbol: -
Assembly: GCA_035041775.1
Location: JAWNKW010000005.1:2080021-2084645[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00056 0.044 14.4 0.4 1 23 140 163 140 163 0.96

2 14 0.0026 0.2 12.3 3.8 2 23 212 234 208 234 0.90

3 14 0.001 0.078 13.6 0.4 1 23 344 367 344 367 0.93

4 14 0.011 0.83 10.3 2.3 2 23 416 437 415 438 0.94

5 14 0.0042 0.33 11.6 1.3 1 23 498 521 498 521 0.90

6 14 1.8 1.4e+02 3.3 0.1 2 14 540 552 539 564 0.85

7 14 0.0024 0.19 12.4 1.3 2 23 572 594 572 594 0.96

8 14 0.00081 0.063 13.9 0.1 1 23 683 706 683 706 0.95

9 14 0.00013 0.0099 16.4 0.3 1 23 744 767 744 767 0.93

10 14 0.001 0.081 13.5 2.2 2 23 817 839 816 839 0.97

11 14 0.0029 0.23 12.1 3.8 1 23 905 927 905 928 0.94

12 14 0.14 11 6.8 1.4 1 21 980 1000 980 1001 0.95

13 14 0.0023 0.18 12.4 0.1 3 23 1026 1047 1025 1047 0.97

14 14 7.9 6.1e+02 1.3 0.7 1 23 1065 1089 1065 1089 0.64

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00056	0.044	14.4	0.4	1	23	140	163	140	163	0.96
2	14	0.0026	0.2	12.3	3.8	2	23	212	234	208	234	0.90
3	14	0.001	0.078	13.6	0.4	1	23	344	367	344	367	0.93
4	14	0.011	0.83	10.3	2.3	2	23	416	437	415	438	0.94
5	14	0.0042	0.33	11.6	1.3	1	23	498	521	498	521	0.90
6	14	1.8	1.4e+02	3.3	0.1	2	14	540	552	539	564	0.85
7	14	0.0024	0.19	12.4	1.3	2	23	572	594	572	594	0.96
8	14	0.00081	0.063	13.9	0.1	1	23	683	706	683	706	0.95
9	14	0.00013	0.0099	16.4	0.3	1	23	744	767	744	767	0.93
10	14	0.001	0.081	13.5	2.2	2	23	817	839	816	839	0.97
11	14	0.0029	0.23	12.1	3.8	1	23	905	927	905	928	0.94
12	14	0.14	11	6.8	1.4	1	21	980	1000	980	1001	0.95
13	14	0.0023	0.18	12.4	0.1	3	23	1026	1047	1025	1047	0.97
14	14	7.9	6.1e+02	1.3	0.7	1	23	1065	1089	1065	1089	0.64

Sequence Information

Coding Sequence: ATGGAGGGTATGGACTTGTGGACTTCAATGTTCTCGACCGACTTTGTGGAGGGAGAAAATAGTTTAAACGAACAATATGATGAACATGTCAATGCCTTGCCCCTAGAcggtgaagaagaagatgataaTGATGCTGCGCCGCACAAAAAGAATACGAAGAACAGAGTAGAGCCTGATGACGATGCGatattcaattttgatttagaACCTATTGTGAGCATTTCCGAAGCACCACCACCGTCATTACAGACAGCACCCTCGCCACCACCGGCAAGGTCACTGCCTCCTACATTGACCGCAGCGTCAGCTCCAGCACCAGTTACAGCATCGATGGCATTGCCAATGCGGCCAACAACATCTCAAATCAATGCCACAGATGAGCACGGAATCCCGATTAACTACGAACTTGGAGTGATTTATATATGTCCAGCCTGCGGCATGGAGTACCGCTTACAGGATCACTGGAAACGTCATATGAATCAAATCCATCAGTACAATACTCGACGGGGCTTAAACTTTGTCGCCATTGATAAGCTCTATCATCGATGCCTCGAATGCAATAAGCACATTGCCATGCACAGCCGAGAGAATCTTTTGAAGCACAAGTTCACGCATTTGCCATTTCGCTGTACCAAATGCTACATCTGCAAACGCGAGTACAAATATAGGCAAGACTTAATGGTTCACTTACGCATGACCCACTGCGATGAGGTGGTGGCTATGATGCGTGCCGGCGATCCCAGATTGGGCAAAAAAACAAGGGTGCGCGAGCCACGTACAGAGGAGCAggagaggaatatgatgaagCATGTCAACAGAAATAACTACGATGAAGATGGCACCGaggttaaaaaagaaatgcttgAGCAGGATATGGATTCCATGTATCCTGAGTCCAACTATATAGATGATGAGCAAAGTCGCAGCTCATCTCAAGAAGCGTcggcaaaaagaaaacgtgTTAATGCCCTTAATTCTGCAGAGGGTGCTGGAACAAGTGCTTCAGATTTATGTGAGGATTATATACACTACATGTGCCCAGATTGCGGCACCGACTGCGACACTAAAGCCCAATGGAATCAGCATATTGAGTTCGTGCACGATTATGTTAGCCGCCGCGGGCTCAACTTTCGCAGTGTGGACAAGCAAATGCAGTGCATGGAGTGTAATCAgTTTGTGCATCCCAGCACCATTAAGGTGTTGCGTCAGCATAAATTCAGCCATTTACCTCAACCGGAATGGTTGCGTTGCAAGCTCTGCTATAAGGCTTATGTAGATCATCAGGAACTGGTGGAGCATTTACTTAAACATCATCACTTGAATACTGTAGTGCAAGAAGCAGCCAACAGTTTGGATGATGGCGAAGACAATGACAATGGTAATGGCTATGATGATGACTCCGAACAAGTGCCAATTTGGGATGAAATGCCGCGTCGTGGGACTGGTGGACGCCATATAGCTATTGATGATATCTATGAGCCACACATTGACTACGTCTGTCCACAGTGCCGCAAGGAGTTTAAGGAAAAGAAGCAATGGCGCATGCATGTGGTACACGTACACGGCATGAACGATTTGGCCAAACTTAACTTTGAAATTATAAACGATCGTCAACTAAAATGCACTGAATGCGACAAAATCATTACCAATGCATATGGCATACAAAATGCTCAACAGCATCGCATCACGCACCTGCCTCATAAGGCATTCGCTCGTTGTCGCAAGTGTCTGAAATCCTACACAGATCGAAAAGGTCTGGTTAAGCATTTGGCCACCTATCATGGCGTTGGCTATGAGCCTCGCAAAATGCATGGTTTACCACCACCCCCGAAGCAGCCACGCAAACAGATTGTTACCGTGGCAAATGAGACATATGAGATTATTTATCTGGATGATGATGAGTCAACAGCCTTGAATGAAGACAATGACTTTGGCGAGCAAATGCAGGAGGAGGAAGAAATCATTATGCCCATCAGCAAGagtagcagcaacaattttggaCGCACTTTCACTTCTTCCGCTCCTCCAGCTGTTAATTCGAATCGCTACAAATGCGTGGACTGTGGCTCGCTATTTGCCACTCAGCCGTCGCTCAAGGCGCATATAAGCGAGGAGCACGATTTCACGGATAACCAATACAGCGCAAAGAAGTTTGACAATGCAGAACCGGTCGAGTCCATGCCAAGTTTGAAGGCTGTCACTTGTTCTACCATTGAAAAGAACTATATTTTCCTTTGTCCCTCCTGCGGAAAGGAGTATAAGACACAGTTTGAGTGGCGGCGGCATATTAATGAGGCACACAATTTCGACAAGCGGCAGTATCTAAATATGCGGCAGCTGGACAAGTATAGATATCAGTGCACACAGTGTAAGGACATTGTGTGCAATTCGAAGTTAAAGGGTCTTCAAGATCATCATTTCCGTCATTTACCCTATCGCCTCTACTTAAAGTGCTTGGTTTGCGGCACTTGCTACAATCACAAGCCTAATATAGCGGCTCATTTGCGCACGCGCCATAATATACTAGAGCGCGATCCTCCAGATCGCGAGCCATACTATAATCGCATGCCTAAGGATTCGCCAGAGGCAGCTTCGTCCTCTGGTCGCTCACTGAAGCCCAATCCTGGCCAACTGCCAATGCGACCGGCGGGTTTAAACACTCTAGAAGACAGCATCAGCTATCACAATGCCGTAGATCTAGACTTTATTACATACTACTGCCCCAAATGCAACAAGAACTTTGATTCACACGCCTTCTGGCGCAAACACATTGTGGAACATCATAATTATAATAGCCGCGATGGCCTTAACTTTCGCCAAATAGACAACCATCATTATTTGTGCTTGGAGTGCTATAAACGTGTTACTGTTACCCACACCAAGGGCGCTATTGGACAGTTGCAGTCGCACAAGTTTCGCCACTTgccatatcgctcatttaaaTGTTTGAGCTGCAACGGGGAGTTTGTGCGtaagcaaatgtttttcaagCATTTGAATAGAGACACAAATCGCTGCGATACTAAGCCACAGACTGATTATACGGATGTCGATCCAAATGCCTATACCTTGCTGTGTCCACAATGTGGAGATGCGTTTAGCAACAAGGCTTCGTGGCGAGAGCACATTAATATTTATCACGCATTGGGTAAGCGCGAATCTCTATATATGAATAAAGTAGGCGAATCAATGTACCAGTGTGTCGAGTGCAACGAAACGATGAATACGAACAAGGTGCGCGAATTGCAACAGCATCGTTTCAAACATTTGCCCTATGCCGCTTATATACGTTGCCAATTGTGCGTGGCGCAAGATGGCGAGGATGATGCTACGGCAGCCGGTCTGCATAGTTTAAGCGAACTGCAGCAGCACATTCGTGACCGTCATCCAGCAATGGCGGAGGATGAacggaaaatgaaaatgctgctTCAAGAAGACGAACCAGAAGCAGAGGAAGACGATCAGCAGCAACCGCTAGATGGAGAGGAGGACAGCATGCCAGCAAATGAGGCAAGTGGCCCTTACATGCCACTACCTCCGCATTTGTATGACGAAGTGGATGACATTGAATTTGATGAACAGTATCTGCTAGGTTAA
Protein Sequence: MEGMDLWTSMFSTDFVEGENSLNEQYDEHVNALPLDGEEEDDNDAAPHKKNTKNRVEPDDDAIFNFDLEPIVSISEAPPPSLQTAPSPPPARSLPPTLTAASAPAPVTASMALPMRPTTSQINATDEHGIPINYELGVIYICPACGMEYRLQDHWKRHMNQIHQYNTRRGLNFVAIDKLYHRCLECNKHIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMTHCDEVVAMMRAGDPRLGKKTRVREPRTEEQERNMMKHVNRNNYDEDGTEVKKEMLEQDMDSMYPESNYIDDEQSRSSSQEASAKRKRVNALNSAEGAGTSASDLCEDYIHYMCPDCGTDCDTKAQWNQHIEFVHDYVSRRGLNFRSVDKQMQCMECNQFVHPSTIKVLRQHKFSHLPQPEWLRCKLCYKAYVDHQELVEHLLKHHHLNTVVQEAANSLDDGEDNDNGNGYDDDSEQVPIWDEMPRRGTGGRHIAIDDIYEPHIDYVCPQCRKEFKEKKQWRMHVVHVHGMNDLAKLNFEIINDRQLKCTECDKIITNAYGIQNAQQHRITHLPHKAFARCRKCLKSYTDRKGLVKHLATYHGVGYEPRKMHGLPPPPKQPRKQIVTVANETYEIIYLDDDESTALNEDNDFGEQMQEEEEIIMPISKSSSNNFGRTFTSSAPPAVNSNRYKCVDCGSLFATQPSLKAHISEEHDFTDNQYSAKKFDNAEPVESMPSLKAVTCSTIEKNYIFLCPSCGKEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCKDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNILERDPPDREPYYNRMPKDSPEAASSSGRSLKPNPGQLPMRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEHHNYNSRDGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLSCNGEFVRKQMFFKHLNRDTNRCDTKPQTDYTDVDPNAYTLLCPQCGDAFSNKASWREHINIYHALGKRESLYMNKVGESMYQCVECNETMNTNKVRELQQHRFKHLPYAAYIRCQLCVAQDGEDDATAAGLHSLSELQQHIRDRHPAMAEDERKMKMLLQEDEPEAEEDDQQQPLDGEEDSMPANEASGPYMPLPPHLYDEVDDIEFDEQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338686; iTF_00336261; iTF_00337862; iTF_00339424;
90% Identity: -
80% Identity: -