Cpro014236.1
Basic Information
- Insect
- Chymomyza procnemis
- Gene Symbol
- -
- Assembly
- GCA_035046065.1
- Location
- JAWNOJ010000026.1:33818369-33822837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 2.2e+02 2.6 0.9 1 23 188 214 188 214 0.83 2 13 0.024 1.7 9.3 0.7 1 23 220 243 220 243 0.97 3 13 2.5e-05 0.0018 18.6 2.9 1 23 248 271 248 271 0.96 4 13 2.1e-05 0.0015 18.9 3.0 1 23 276 298 276 298 0.98 5 13 0.12 8.9 7.0 6.8 2 23 305 326 304 326 0.94 6 13 0.00027 0.019 15.4 3.6 3 23 335 355 334 356 0.95 7 13 0.005 0.35 11.4 0.2 1 23 362 385 362 385 0.95 8 13 0.0023 0.16 12.5 0.1 2 23 396 418 395 418 0.96 9 13 0.0012 0.088 13.3 0.5 1 23 447 469 447 469 0.97 10 13 0.00012 0.0087 16.5 3.7 1 23 475 497 475 497 0.96 11 13 8.4e-06 0.0006 20.1 0.1 2 23 504 525 504 525 0.97 12 13 0.0041 0.29 11.7 1.2 1 23 532 554 532 554 0.98 13 13 0.00036 0.026 15.0 3.5 1 23 560 583 560 583 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGCCGCACCTGTGCCAAGTGCGATTTCGAAAATGGCAACAATAGCTATTGGCTTGATTTATTCCATCCGACGCGTTGGCAAACTGAAATGGCACAAATACGTTTGGAGTTTGTCAATTGGAAACTAAAGATCTCAGCCAACGATGGTTTGccccaaaaaatatgtaccGACTGTTTTACGAAATTCTGTTCAGTTTATACATTTCGTCTGGCATGTCAGGATGCGCAGTTAACGCTATCGAACATCTACGATAAAATCGATGCTAGCAGTCTAGATGGCAAAACTGATGATTATGAGATTGCTGCAGATGAGACGGAAGCTGAAGCTATATTGGAAAGCATAATAACGaccaaaaaaccaacaacgGTTTCAACAGTAGCCGAAGATTTATTGAATGCAACGATAAATATACCAAACACTGCCCTAGTTGAAACGCCAGCTACGTCACCTATTGAAATTCTTCCAGTAGATTATATAAATGACGAGGATAATATCATCGAAGAAGTTGAACGAGATGTAGATAGTGAAAAATTAGCACTAGGCGTTATAACATTtgcttgtaaattttgttacaaagcAAAGGAAAGCTATGAATTACAACAGCAACTGCTGGAACACATTAATACCGTACACGATGCACAACAGCCGTATAATTGTCCCGAATGCTCGGATTGTTTTCAGGATGCCGCATCGCGTACCGtgcatataaaaagcaatCATGTGGAGAAGCACTACGTTTGTGATGTTTGTGGTAAAAAATATGGTGATCGTCATAATTTGCGCCATCACGTGGAAAAGTATCACTCTGAGACTGATTTCGAGTGCAATATGTGCGAAAAACGTTTCTTTACGCGTAAAAGTCTTAACTATCACATGAAGTGGCACAATCCGGAGCGACAGCTTAAGTGTAGCCATTGTGATCGTTTATTTATCAATCAAAGGCATCTCAAATGTCATGAGGCAACGCATACGGGTGCGCGGAATAGTGAACTCTGCGGCTTTTGTGGCAAATCTTTCATACATCTGAAGACACTGCGTTGGCATATTTATCGCCATCATGGTGGTGAGAAACCCTATAAATGTGCAAATTGCACTGAGGtttttgCCTCCTACGCCGAGAAACGCATTCATATGCTCGATCAACATGCGGAAAATTTAACGGCCATCGAACGCAGCGAGTGTATGCTGTGTCGTCAGCCGTATGCCAATGAGCAGGAGCTTAAGGATCACATGAGAGTGGAGCATCTACAACGTAATGGTTTTACGCCTATTATAGCCAACAACAAGCGTGTACTTCAACAGAAACGTGCACGTCAATACACTGGGCTCTTTCAGTGTTCCAGCTGTACGCAGCGCTTTAATATGAAATCAGCACTGGACCGACATGCGGCTGTACATTCGGCGGATCGTCCACATGCATGCAGCAATTGCTCGAAACGCTTCAAGCGTATTCAAGACATGAAATGGCACATGAAAACTCATGACAACGAGAAGCCCAATGTATGTGATGTCTGTGGCAAGGCATTTGCTTTAAAGTACGTGCTTACTCAGCATATGCGCAGTCATGAAGTGCTTGAGAAGAACTTCAAATGCGAAACTTGTGGTCGTAcctatttatttgaaaaatctttgcGTTTGCATGAGCGTATACATACGggaaaaacttattataagTGCGATTTATGCCAGGAACGATTTGTAactcatataaaatttaaaactcaCATGCAAAAAGCTCATGATGTGGCCCAAACCATGGCAAAAGAATATCCGCTGGacgatttaattaatattgttatttcataa
- Protein Sequence
- METCRTCAKCDFENGNNSYWLDLFHPTRWQTEMAQIRLEFVNWKLKISANDGLPQKICTDCFTKFCSVYTFRLACQDAQLTLSNIYDKIDASSLDGKTDDYEIAADETEAEAILESIITTKKPTTVSTVAEDLLNATINIPNTALVETPATSPIEILPVDYINDEDNIIEEVERDVDSEKLALGVITFACKFCYKAKESYELQQQLLEHINTVHDAQQPYNCPECSDCFQDAASRTVHIKSNHVEKHYVCDVCGKKYGDRHNLRHHVEKYHSETDFECNMCEKRFFTRKSLNYHMKWHNPERQLKCSHCDRLFINQRHLKCHEATHTGARNSELCGFCGKSFIHLKTLRWHIYRHHGGEKPYKCANCTEVFASYAEKRIHMLDQHAENLTAIERSECMLCRQPYANEQELKDHMRVEHLQRNGFTPIIANNKRVLQQKRARQYTGLFQCSSCTQRFNMKSALDRHAAVHSADRPHACSNCSKRFKRIQDMKWHMKTHDNEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRTYLFEKSLRLHERIHTGKTYYKCDLCQERFVTHIKFKTHMQKAHDVAQTMAKEYPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00336177; iTF_00336977; iTF_00337782; iTF_00338607;
- 90% Identity
- iTF_00338607; iTF_00336177; iTF_00337782;
- 80% Identity
- -