Ccau014619.1
Basic Information
- Insect
- Chymomyza caudatula
- Gene Symbol
- -
- Assembly
- GCA_035041775.1
- Location
- JAWNKW010000189.1:2788268-2792201[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9 2.3e+02 2.7 0.9 1 23 181 207 181 207 0.83 2 13 0.042 3.3 8.5 0.8 1 23 213 236 213 236 0.96 3 13 4.7e-05 0.0036 17.8 2.7 1 23 241 264 241 264 0.95 4 13 2.1e-05 0.0016 18.9 3.0 1 23 269 291 269 291 0.98 5 13 0.048 3.7 8.3 7.6 1 23 297 319 297 319 0.96 6 13 0.00014 0.011 16.3 3.9 2 23 327 348 327 349 0.94 7 13 0.0036 0.28 11.8 0.2 1 23 355 378 355 378 0.96 8 13 0.019 1.5 9.5 0.2 2 23 389 411 388 411 0.94 9 13 0.0012 0.093 13.3 0.5 1 23 440 462 440 462 0.97 10 13 2.9e-05 0.0023 18.4 2.9 1 23 468 490 468 490 0.96 11 13 8.1e-06 0.00063 20.1 0.1 2 23 497 518 497 518 0.97 12 13 0.0065 0.5 11.0 1.0 1 23 525 547 525 547 0.98 13 13 7.5e-05 0.0058 17.1 3.6 1 23 553 576 553 576 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGCCGCACCTGTGCAAAGTGCGATTTTGAAAGTGGCAACAATAACTATTGGCTGGATTTATTTCATCCAACGTGTTGGCAAAACGAAATCGCACAAATACGTTTGGAGTTTGTGAATTGGAAGCTAAAGATCTCCGCCAATGATggtttgccacaaaaaatatgcacGGACTGTTTTACAAAATTCTGTTCAGTTTATACATTTCGTCTCGCTTGCCAGGAAGCGCAATTAACGCTATCGAATATATACGATAAAATCGATGCTAGCAGCCTAGATGGCAAAACTGAAGATGATGAGGATGCTGAAGATGAAGCTATTTTCGAAAGCATAGCAACggccacaacaataacaacggtTTCAGCCGAAAACCTATATAACACAACGATAACTACACAAAACACTGCCCTTGTGAAGACGCCGACACCGTCACCAATTGAAATTATTCCAGTAGAACATATAAACGATGAAGATATCGTTGAGGAAGTTGAATCTTATATAGATAATGCAAAATTAGCATTAGGCGTTATTACTTTTGCttgtaaattttgttacaAGGCAAAGGAGAGCTatgaattacaacaacaactgctggAACATATTAATACTGCACATGATCCGCAGCAGCCATATAATTGTCCTGAATGTTCCGATTGTTTTCAGGATGCTGCTTCTCGCACGGTACACATAAAGAACACTCATGTGGAGAAGCATTATGCGTGTGAAGTTTGTGGCAAGAAATACGGTGATCGTCATAATCTGCGTCATCATGTGGAGAAGTATCACTCTGAGACGGATTTCGAATGCAATATGTGCGAAAAACGTTTCTTTACGCGCAAAAGTCTTAACTATCATATGAAGTGGCACAATCCAGATCGTCAGTTTAAGTGTAGCCACTGCGATCGACTGTTTATCAATCAGAGGCATCTCAAGTGTCATGAGGCGACGCATACGGGTGCGCGCAATAGTGAAACTTGTGGCTTTTGTGGCAAATCTTTTATACATCTGAAGACTTTACGCTGGCATATTTATCGGCATCATGGTGGTGAAAAACCCTACAAGTGTGCAAATTGCACGGAGGTTTTTGCCTCCTACGCCGAGAAACGAATCCATATGTTGGAACAGCACACGGAAAATCTAACGGCCATTGAACGCAGCGAATGTATGCTGTGCCGCCAGCAGTATGCCAATGAGCAGGAATTAAAGGACCACATGAAAGCGGAGCATCTGCAGCCAAAGGGCTCCGCACCCATTATATCCAACAACAAACGTGTACTTCAACAGAAACGTCAACGTCAATACACAGGACTCTTCCAATGCTCCAGCTGTACCCAGCGCTTCAACATGAAGTCAGCTCTGGACAGGCACGCGGCTGTACACTCAGCGGATCGTCCGCACGCCTGCAGTATATGCTCTAAACGTTTTAAACGTGTCCAAGATATGAAGTGGCATATGAAAACCCATGACAATGAGAAATCCAATGTTTGTGATGTATGCGGCAAGGCGTTTGCTCTGAAATATGTGCTTACCCAGCATATGCGGAGTCATGAGGTGCTAGAGAAGAATTTCAAATGCGGAACTTGTGGACGAAcctatttatttgaaaagtcaCTGCGTCTGCACGAGCGTGTTCATACTGGGAAGACATATTACAAGTGCGATGTATGCCAGGAGCGTTTTGTTActcatattaaatttaaaaCTCACATGCGGAAAGTTCATGACGTGGCTCAAACGAATACAACTGAATATCAGCTTGACGATTTGATTAATATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAKCDFESGNNNYWLDLFHPTCWQNEIAQIRLEFVNWKLKISANDGLPQKICTDCFTKFCSVYTFRLACQEAQLTLSNIYDKIDASSLDGKTEDDEDAEDEAIFESIATATTITTVSAENLYNTTITTQNTALVKTPTPSPIEIIPVEHINDEDIVEEVESYIDNAKLALGVITFACKFCYKAKESYELQQQLLEHINTAHDPQQPYNCPECSDCFQDAASRTVHIKNTHVEKHYACEVCGKKYGDRHNLRHHVEKYHSETDFECNMCEKRFFTRKSLNYHMKWHNPDRQFKCSHCDRLFINQRHLKCHEATHTGARNSETCGFCGKSFIHLKTLRWHIYRHHGGEKPYKCANCTEVFASYAEKRIHMLEQHTENLTAIERSECMLCRQQYANEQELKDHMKAEHLQPKGSAPIISNNKRVLQQKRQRQYTGLFQCSSCTQRFNMKSALDRHAAVHSADRPHACSICSKRFKRVQDMKWHMKTHDNEKSNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCGTCGRTYLFEKSLRLHERVHTGKTYYKCDVCQERFVTHIKFKTHMRKVHDVAQTNTTEYQLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339365;
- 90% Identity
- -
- 80% Identity
- -