Ccos018349.1
Basic Information
- Insect
- Chymomyza costata
- Gene Symbol
- -
- Assembly
- GCA_018150985.1
- Location
- JAECWU010000030.1:4719910-4725997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.9 7.9e+02 0.9 2.3 3 16 58 71 57 73 0.84 2 14 2.8 2.2e+02 2.7 0.9 1 23 185 211 185 211 0.83 3 14 0.022 1.7 9.3 0.7 1 23 217 240 217 240 0.97 4 14 4.5e-05 0.0036 17.7 2.7 1 23 245 268 245 268 0.95 5 14 2e-05 0.0016 18.9 3.0 1 23 273 295 273 295 0.98 6 14 0.046 3.7 8.3 7.6 1 23 301 323 301 323 0.96 7 14 0.00025 0.02 15.4 3.6 3 23 332 352 331 353 0.95 8 14 0.0046 0.37 11.4 0.2 1 23 359 382 359 382 0.95 9 14 0.0086 0.68 10.6 0.2 2 23 393 415 392 415 0.95 10 14 0.0011 0.091 13.3 0.5 1 23 444 466 444 466 0.97 11 14 2.8e-05 0.0023 18.4 2.9 1 23 472 494 472 494 0.96 12 14 7.8e-06 0.00062 20.1 0.1 2 23 501 522 501 522 0.97 13 14 0.0035 0.28 11.8 1.2 1 23 529 551 529 551 0.98 14 14 9.1e-05 0.0073 16.8 3.1 1 23 557 580 557 580 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGCCGCACCTGTGCAAAGTGCGATTTTGAAAATGGTAACAATAGCTATTGGCTTGATTTATTTCATCCGACGCGTTGGCAAACTGAAATGGCACAAATACGTTTGGAGTTTGTCAATTGGAAACTAAAGATCTCCGCCAACGATGGTTTGCCCCAAAAAATATGCACAGACTGTTTTACAAAATTCTGCTCAGTTTATACATTTCGTCTAGCTTGTCAGGATGCGCAGTTAACGCTATCTAATATATACGATAAAATCGATGCCAGCAGTATAGATGGCAAAACTGAAGATGATGCGGAAGCTGGAGATGAAGCTGAAGCTATTTTGGAAAGCATAATAACGACCAAAAAAATAACAACGGTTTCAACAGTAGCCGACAACTTTTTGAATACAACGATAAATACACCAAACACTGCCCTTGTTGAGACGCCGACATCGTCATCTATGGAAATTTTTCCAATAGAAGATATAAACGAAGAAGATATCATCGAGGAAACTGAACCTGATCTAGATAGTCAAAAATTAGCACTAGGCGTGATAACTTTTGCTTGTAAATTTTGTTACAAAGCTAAGGAAAGCTATGAATTGCAACAGCAATTGTTGGAACACATAAATACTGCACATGATGCACAACAGCCCTATAACTGTCCCGAATGTTCCGACTGTTTTCAGGATGCAGCTTCGCGCACCGTGCACATAAAAAGCAATCATGTGGAGAAGCATTATGCCTGTGAAGTTTGTGGCAAAAAATATGGTGATCGTCATAATCTGCGTCATCATGTGGAAAAGTATCACTCTGAAACAGATTTTGAGTGCAATATGTGTGAAAAACGTTTCTTTACACGCAAAAGCCTAAACTATCATATGAAGTGGCACAATCCAGAGCGTCAGTTTAAGTGTAGCCATTGCGATCGCTTGTTTATCAATCAGAGGCATCTCAAATGTCATGAGGCAACGCATACGGGTGCGCGGAATAGTGAACTTTGTGGCTTTTGTGGCAAATCTTTTATACATCTGAAGACATTACGTTGGCATATTTATCGCCATCATGGTGGTGAGAAACCCTATAAGTGTGCAAATTGCACAGAGGTTTTTGCCTCCTACGCCGAGAAACGCATTCATATGCTGGATCAACACACGGAAAATCTAACGGCTATTGAGCGCAGCGAGTGTATGTTGTGCCGACAGCAGTATGCCAATGAGCAGGAGCTAAAGGACCATATGAGAGGGGAGCATCTTCAACGAAATGGCTTCACACCCATTATAACTAACAACAAGCGGGTACTTCAACAGAAACGTGAACGTCAATACACTGGTCTCTTTCAATGCTCCAGCTGTACCCAGCGTTTCAACATGAAATCAGCTCTAGACAGGCATGCGGCTGTACACTCAGCGGATCGTCCACACGCCTGCAGCATATGCTCAAAACGCTTTAAACGTGTTCAAGACATGAAATGGCACATGAAAACCCATGACAATGAGAAACCCAATGTATGTGATGTCTGTGGTAAGGCATTTGCTCTGAAGTATGTGCTTACCCAGCATATGCGCAGTCATGAGGTGCTTGAGAAGAATTTCAAATGCGAAACCTGTGGACGAACCTATTTATTTGAAAAGTCGTTGCGTTTGCACGAGCGTGTTCATACCGGAAAAACTTATTATAAGTGCGATATATGCCAGGAGCGTTTTGTTACACATATTAAATTTAAAACTCACATGCAAAAAGCTCATGATGAGGCACAAACCAAGGCAAAAGAATATCCGCTGGACGATTTAATTAACATTGTTATTTCCTAA
- Protein Sequence
- METCRTCAKCDFENGNNSYWLDLFHPTRWQTEMAQIRLEFVNWKLKISANDGLPQKICTDCFTKFCSVYTFRLACQDAQLTLSNIYDKIDASSIDGKTEDDAEAGDEAEAILESIITTKKITTVSTVADNFLNTTINTPNTALVETPTSSSMEIFPIEDINEEDIIEETEPDLDSQKLALGVITFACKFCYKAKESYELQQQLLEHINTAHDAQQPYNCPECSDCFQDAASRTVHIKSNHVEKHYACEVCGKKYGDRHNLRHHVEKYHSETDFECNMCEKRFFTRKSLNYHMKWHNPERQFKCSHCDRLFINQRHLKCHEATHTGARNSELCGFCGKSFIHLKTLRWHIYRHHGGEKPYKCANCTEVFASYAEKRIHMLDQHTENLTAIERSECMLCRQQYANEQELKDHMRGEHLQRNGFTPIITNNKRVLQQKRERQYTGLFQCSSCTQRFNMKSALDRHAAVHSADRPHACSICSKRFKRVQDMKWHMKTHDNEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRTYLFEKSLRLHERVHTGKTYYKCDICQERFVTHIKFKTHMQKAHDEAQTKAKEYPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00339365;
- 90% Identity
- iTF_00339365;
- 80% Identity
- -