Basic Information

Insect: Chymomyza costata
Gene Symbol: -
Assembly: GCA_018150985.1
Location: JAECWU010000379.1:18850463-18854817[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.7 3e+02 2.3 3.3 3 20 343 360 341 362 0.91

2 18 0.62 50 4.7 0.3 1 23 371 396 371 396 0.94

3 18 0.042 3.3 8.4 3.8 2 23 407 428 407 428 0.93

4 18 2.5 2e+02 2.8 0.5 3 23 469 490 468 490 0.93

5 18 0.0015 0.12 12.9 0.3 3 23 498 518 496 518 0.96

6 18 1.4e-05 0.0012 19.3 0.7 1 23 524 547 524 547 0.98

7 18 1.7e-05 0.0014 19.1 0.9 2 23 552 573 551 573 0.97

8 18 5.4 4.3e+02 1.8 0.2 1 9 581 589 581 601 0.76

9 18 0.00053 0.043 14.4 0.2 1 22 622 643 622 646 0.90

10 18 5.2 4.1e+02 1.8 4.0 3 21 653 671 653 672 0.89

11 18 0.0011 0.086 13.4 0.7 1 23 691 716 691 716 0.96

12 18 0.063 5.1 7.8 1.9 1 23 741 764 741 764 0.95

13 18 0.0015 0.12 12.9 0.5 2 23 770 792 769 792 0.93

14 18 0.0035 0.28 11.8 0.2 2 23 796 818 795 818 0.95

15 18 0.00051 0.041 14.4 4.8 1 23 824 846 824 846 0.97

16 18 0.0045 0.36 11.4 0.2 3 23 852 873 851 873 0.97

17 18 4.7e-06 0.00038 20.8 0.8 1 23 879 902 879 902 0.97

18 18 0.095 7.6 7.3 2.2 4 23 909 934 906 934 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.7	3e+02	2.3	3.3	3	20	343	360	341	362	0.91
2	18	0.62	50	4.7	0.3	1	23	371	396	371	396	0.94
3	18	0.042	3.3	8.4	3.8	2	23	407	428	407	428	0.93
4	18	2.5	2e+02	2.8	0.5	3	23	469	490	468	490	0.93
5	18	0.0015	0.12	12.9	0.3	3	23	498	518	496	518	0.96
6	18	1.4e-05	0.0012	19.3	0.7	1	23	524	547	524	547	0.98
7	18	1.7e-05	0.0014	19.1	0.9	2	23	552	573	551	573	0.97
8	18	5.4	4.3e+02	1.8	0.2	1	9	581	589	581	601	0.76
9	18	0.00053	0.043	14.4	0.2	1	22	622	643	622	646	0.90
10	18	5.2	4.1e+02	1.8	4.0	3	21	653	671	653	672	0.89
11	18	0.0011	0.086	13.4	0.7	1	23	691	716	691	716	0.96
12	18	0.063	5.1	7.8	1.9	1	23	741	764	741	764	0.95
13	18	0.0015	0.12	12.9	0.5	2	23	770	792	769	792	0.93
14	18	0.0035	0.28	11.8	0.2	2	23	796	818	795	818	0.95
15	18	0.00051	0.041	14.4	4.8	1	23	824	846	824	846	0.97
16	18	0.0045	0.36	11.4	0.2	3	23	852	873	851	873	0.97
17	18	4.7e-06	0.00038	20.8	0.8	1	23	879	902	879	902	0.97
18	18	0.095	7.6	7.3	2.2	4	23	909	934	906	934	0.83

Sequence Information

Coding Sequence: ATGTCGGAAAACACTAAGGCAAGTCCAAGCTGCCTGCATTGCAGCACAAGCAAACCAAATTTACATTATCAGGCCATATATGATGAAGTGGGCATACAAATCGGCTTGGCCGATTTAATGTCCAAGTTTTACAAGATAAATGTGACGTCCAAGGTTGGTGAAGCGCAGTTGCTGTGCGAGGATTGTGTAAGTAACCTAATACAACTGTACGACATTGATGAGCTTGAAAAACAACGTAATGCTGCCAAAAGTAAGCCGCCGGTTGCTCAGGCCGCTAGAAGTGAAACTAAACAGCAGCAAAGCAAGCTAGAAGCAGCACTTAAGTCGCCAACTAAAGCCGTGCCAGTTGAAGCCTCCCCAGCAAATGAGCGTGTAACACGTGCAAGTAGTTCTGCGCGACTTGCCGCAAAATCTGTGCCTGCAAAGATTACAGCCGTGTTGGAAAAACCCTCTAAGGCTGTTAAGTCTATAGTAACTATTGCAGCGGCTGAAAAACCAAAAGTGAAGAAGCTGGTGTTGCCAAGACAGACGACTATTGCTAAGGTTGCAACGAAGAGGAAAAGTTCTGAACCAAGCAAAGTGACACCAAATAAAGAGCAGCCTGAAACTAGCAGCTCACAGGATGCTATTACGGTTTTGATGCAAAACATATTAGCTGATGATGGTGAAGGTACAGCAATTAATGCTGAGATAACTGAACAAAAATCTTTACCCAAAACATTTTTGGGCAATGATGAAACCTACTACAATATTGAAAAGCTGGAAATTGATATTCCAGAAGAACTAGAAGGGGAGTTTGACAGCATTGATTCTGATGAGGCCAATTTGGAAGAATTAAAAATAGATATTGTAGGAGCAGTTCCTGTTAAAAAATCCGAAAGCATCAACAGCGAAGATTCAGCAAACATAGATCCCTTTGTATTTTTGCCCATTAAAGAGAAGGACGATGTAGGCGACTTGTACGAATACTTGGAGACAGCCGTAAAGACTTCTTTTGAGACCTTAACTTTTGATTGGGAAACAGCTTGTCAGCATTGTACGTTCAAGTGCTCGAATTTTCAAAGCCTGTTAACGCATGCTTTAAAGTGTAAAAAGGCAGCCAACGGAATTTATAAGTGTCCAATTAATAAGTGCACTCAACAACTCAAGGGGCGCAAAAAGTTGGCCATGCACTTGGTAGTGCAACATGCTGTAGATAATAACGTTCCAATATATGGCAGCTGCCCGGAGTGTCACATGACCTTTTCGAATATAATGACTTACAACAAACATTCTTGCGCTCATATTTTCAAAAAGAAACGCGGCGCAATCTTGCATTGTCAACTATGTGCCATTGAATTTCCCTCTTGGAAACGCTATCTTTTTCATACACAATTTCATTTCGAAAAGCATCGTCCTAAAGCTTGCTTTATATGCAATTATGTTGAGTATGATCTGGACAAACTGTTTCATCATTTAAATTACGCTCACGAGCCCAGTGGCACCTTATTCTGTACCATCTGCGATCGCATGTTTCGCGATCCGCAAGTCTTCGAAGAGCACAAAGCAACACATACAGTTTCCGGCACATATACCTGCAATGAATGCGGTAGTACTTTTGAAACACGCGGTCGCTTAAATGGCCATATGCGTACCCAACACGGTGCTTTGATATACTGTGAACTCTGCTCAAAAGAGTTTTCCACAGAAACAACTTTCAATATTCATATGAGAACACATTTGATCATACAACGTGAACTTTATGTGTGCACCAATTGCAATAAGTTGAGCGATAGCCACGAGAGAATACAGGAACACGTTGAGAACGAAGAAGTTGGTTCCTGTTATGGTGTTGAAGTAATAAAAGAAGTGCTACGAGATGCCTATATCTGCGAATATTGTTCTGCTTATTTTAAAACAAAAGATGCCCTGCGTGTGCATCGCGAGTCGGGCATACACAAGGATGGTCTCTTCTGGTGTGAACCCTGTTTTAAGCATTTTACCCATGTAAAACTTTATCGCCATCATTTAAGACAACAGCAAAAATTACGCACGGATACGGCGCATAGAAAAATGGAAATGTGTATTTACTATATGTGTGATTATGAGAACTGCGACGAATCATATGTTAATTGGAACTCACTGTATACCCATAAGCGTCGCACGCACGATATAATGAAATCCATTGATGCATCACCTGCAGCAAATACAACCAATGCCGAAGAAAAAGATAAGGCCAAATTTATATGTCAATTTTGCAAAAAGGAATGCCAAACCAAGATGTCACTAGCAATTCATGTTGCGCGCAGTCATAACAATAACAACCTAGTGTGTCCTTTGTGCAAGGCATCCTATAAGAATGAAGAACTCTTGCAAAAACATCATGAATACTGGCATGAGCCCACCGAGTGTCCTACTTGTTTAAAAGTGGTCAAAAATCGTCGCAACTATGAAACTCATGTAAATGTGGTGCACTCGAAGAAAAAGCGTTACCATTGCAGCATCTGCAAAAAGGGTTTTTATCATAAAAGTGAAATGACAGTGCATGAGCGGTTGCATACTGAAGCACACGGCTGTGAGATTTGTAATTTTACAACGAGAAACAAGGCATCCTTGGATCTTCATATGCTGGTTCAACATTTTAAGAAATATCCATTTGAGTGCAAGGTTTGCGGTAAGGGCTTTGGACGCAAGCAGGGCTTGACCTATCACATGCAACGTACCCATGGTGAAAAACATCGTTGTCGTGATTTTTTTGCAAATGGCTGTAGCAAAATATTTGGTTCAATGACTCATTTGAGCGCGCATGTGCGCAAGGTTCATAAGAGCACCATACAGCTGGAGGAGCTTGAGGATGAAAGCAACAATGAGGTTTCGGATGCAAAACGTCGTTGCTTTAAAATTGATGATATGCGTATAGAATTTATTGGCATAGATGATGATGAGATTGAAAATGATGCTGCGGATTATGAAGCAATCGACGATGATAATGATGGAGAAAGTGACTCTAATGTTGTATCGCAGGTAATCGAAGTGCTGGATAATGATGAGTAA
Protein Sequence: MSENTKASPSCLHCSTSKPNLHYQAIYDEVGIQIGLADLMSKFYKINVTSKVGEAQLLCEDCVSNLIQLYDIDELEKQRNAAKSKPPVAQAARSETKQQQSKLEAALKSPTKAVPVEASPANERVTRASSSARLAAKSVPAKITAVLEKPSKAVKSIVTIAAAEKPKVKKLVLPRQTTIAKVATKRKSSEPSKVTPNKEQPETSSSQDAITVLMQNILADDGEGTAINAEITEQKSLPKTFLGNDETYYNIEKLEIDIPEELEGEFDSIDSDEANLEELKIDIVGAVPVKKSESINSEDSANIDPFVFLPIKEKDDVGDLYEYLETAVKTSFETLTFDWETACQHCTFKCSNFQSLLTHALKCKKAANGIYKCPINKCTQQLKGRKKLAMHLVVQHAVDNNVPIYGSCPECHMTFSNIMTYNKHSCAHIFKKKRGAILHCQLCAIEFPSWKRYLFHTQFHFEKHRPKACFICNYVEYDLDKLFHHLNYAHEPSGTLFCTICDRMFRDPQVFEEHKATHTVSGTYTCNECGSTFETRGRLNGHMRTQHGALIYCELCSKEFSTETTFNIHMRTHLIIQRELYVCTNCNKLSDSHERIQEHVENEEVGSCYGVEVIKEVLRDAYICEYCSAYFKTKDALRVHRESGIHKDGLFWCEPCFKHFTHVKLYRHHLRQQQKLRTDTAHRKMEMCIYYMCDYENCDESYVNWNSLYTHKRRTHDIMKSIDASPAANTTNAEEKDKAKFICQFCKKECQTKMSLAIHVARSHNNNNLVCPLCKASYKNEELLQKHHEYWHEPTECPTCLKVVKNRRNYETHVNVVHSKKKRYHCSICKKGFYHKSEMTVHERLHTEAHGCEICNFTTRNKASLDLHMLVQHFKKYPFECKVCGKGFGRKQGLTYHMQRTHGEKHRCRDFFANGCSKIFGSMTHLSAHVRKVHKSTIQLEELEDESNNEVSDAKRRCFKIDDMRIEFIGIDDDEIENDAADYEAIDDDNDGESDSNVVSQVIEVLDNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00338616; iTF_00336187;
90% Identity: iTF_00338616; iTF_00336187;
80% Identity: -